Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq9360 203 3e-47 >seq9360 Length=2047533 Score = 203 bits (224), Expect = 3e-47 Identities = 579/880 (66%), Gaps = 9/880 (1%) Strand=Plus/Minus Query 4257 TTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTT 4316 ||||| ||||| |||| |||||| ||||||||||| || |||| | ||| || Sbjct 1278307 TTTTGATATTCCCCAACTCTCTTTTCAAAGAAATTAGTCTTCCCTTGGAGCGAGATCAGC 1278248 Query 4317 TCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGC 4376 ||||| ||||||| ||||| | | ||| | || | || || || | | | Sbjct 1278247 TCCATCCAATCAAAAGGATTCGCCACTCCGTACAGCTTCCCGTACCCAAGCGCACCCAAC 1278188 Query 4377 AATCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAAT 4436 |||| || || ||||| ||||| ||||| ||||| | ||| | || || || | || Sbjct 1278187 AATCTATCCGCGACAAACTCTATGTACTGACTCATCAATTCTCCATTCATCCCCACCAAC 1278128 Query 4437 -CTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTAT 4495 | ||| || ||||| | || ||||||| ||||| || || || | | || Sbjct 1278127 GCGCAC-GGCAGCGCATCGCACACAAACTCTCTCTCTATCTCCACCGCCTCCTTCACTAA 1278069 Query 4496 ATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAA-ACAATAAACACGCAA 4554 | || | | | || | | | || | | || | || | |||| | ||||| | Sbjct 1278068 CGCCTTCACTCTCTCCTCGCTTAGCTT-TGTCCTCAATAAACTGTACAACAGGCACGCGA 1278010 Query 4555 AATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAATCCGGGC 4613 |||| || || | ||| || |||| || | |||| ||||| || || |||||||| ||| Sbjct 1278009 AATCGCAGTGGAGACCCTCATCTC-GCGAGATCAACTCGTTTGAGAATGTTAATCCCGGC 1277951 Query 4614 ATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCT 4673 ||||| || | |||||| ||||||||||| ||| ||| ||| || ||||| || || Sbjct 1277950 ATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATCCCC 1277891 Query 4674 TCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTAATCCAT 4733 || ||| |||||||| | ||||| | |||| | || | | | | ||||| Sbjct 1277890 TCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGT-CT--CCGAGCCGTCGATCCAA 1277834 Query 4734 TTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAATAAT 4793 ||||| ||||| | ||||| || ||||| |||| || | || |||| ||| | Sbjct 1277833 TTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGTGAAAGAGA 1277774 Query 4794 TTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAA 4853 | ||||| | ||||| || ||||| |||| || || |||||||| || Sbjct 1277773 CGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACATTTCGGAG 1277714 Query 4854 TGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACT 4913 || || || || || || || || || ||||| ||| | || || | || || || Sbjct 1277713 TGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCGGCGACCTGGACC 1277654 Query 4914 TCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAAC 4973 || | || ||| | | | ||| ||| || || ||||| |||||| || || Sbjct 1277653 TCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCGAAGAAG 1277594 Query 4974 GCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAA 5033 || | || || | | |||| || ||||||| | || | ||||||| | | | Sbjct 1277593 GCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGGCGGAGA 1277534 Query 5034 TCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATA 5093 |||| | | ||||||||| ||| | ||||||||||||||||| ||||| |||||||| Sbjct 1277533 TCTTGCGAAAGATCAACTTCCTCAGCGGTCCAAAACGACGCTTCGGCTTTCTTGTACATT 1277474 Query 5094 GACCAAATATCAGGATACTGAATCGGAAGTATGACAAATC 5133 |||||| | || ||||||||||| | ||| ||||| Sbjct 1277473 TCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATC 1277434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426971972391695