Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20cavaleriei_20[genbank_20GCA_5F002013975.1_202017-03-03] 14,915 sequences; 357,216,162 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq5989 134 2e-26 seq5924 134 2e-26 seq7036 129 8e-25 seq7917 104 3e-17 >seq5989 Length=495927 Score = 134 bits (148), Expect = 2e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||||||||| | ||| | |||||| | |||| | || | || |||||| | |||||| Sbjct 124854 ACCTCCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCC 124795 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| || ||||||||| ||||||||||||| ||||||||| || || || Sbjct 124794 ATTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACTGA 124735 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || || ||||| || ||| ||| | |||||| ||||| || |||||||| Sbjct 124734 GACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGAT 124675 Query 76933 GCCCTCTATACTATCATCCATCAT 76956 || || ||||||||||| |||| Sbjct 124674 TCCTTCAATACTATCATCTTTCAT 124651 Score = 134 bits (148), Expect = 2e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||||||||| | ||| | |||||| | |||| | || | || |||||| | |||||| Sbjct 135396 ACCTCCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCC 135337 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| || ||||||||| ||||||||||||| ||||||||| || || || Sbjct 135336 ATTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACTGA 135277 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || || ||||| || ||| ||| | |||||| ||||| || |||||||| Sbjct 135276 GACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGAT 135217 Query 76933 GCCCTCTATACTATCATCCATCAT 76956 || || ||||||||||| |||| Sbjct 135216 TCCTTCAATACTATCATCTTTCAT 135193 Score = 120 bits (132), Expect = 4e-22 Identities = 114/143 (80%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| |||||||| | ||||||||||||||| ||||||||| ||| || | | || Sbjct 124524 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 124465 Query 77053 GTATGTTTCAATAACTGCTTCTATATCC-CATTGATGAATTCCTACAGCGACACGCATCA 77111 |||||||| |||| | | || ||||| | ||| |||||||| | || || | ||||| Sbjct 124464 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 124406 Query 77112 ACATATGCTGAGGTCGTTCTACA 77134 ||||||||||||||| ||||||| Sbjct 124405 ACATATGCTGAGGTCTTTCTACA 124383 Score = 113 bits (124), Expect = 6e-20 Identities = 113/143 (79%), Gaps = 3/143 (2%) Strand=Plus/Minus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| |||||||| | ||||||||||||||| ||||||||| ||| || | | || Sbjct 135066 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 135007 Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111 |||||||| || | | | || ||||| | ||| |||||||| | || || | ||||| Sbjct 135006 GTATGTTTTAA-AGCAGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 134949 Query 77112 ACATATGCTGAGGTCGTTCTACA 77134 ||||||||||||||| ||||||| Sbjct 134948 ACATATGCTGAGGTCTTTCTACA 134926 >seq5924 Length=8700 Score = 134 bits (148), Expect = 2e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||||||||| | ||| | |||||| | |||| | || | || |||||| | |||||| Sbjct 7212 ACCTCCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCC 7271 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| || ||||||||| ||||||||||||| ||||||||| || || || Sbjct 7272 ATTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACTGA 7331 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || || ||||| || ||| ||| | |||||| ||||| || |||||||| Sbjct 7332 GACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGAT 7391 Query 76933 GCCCTCTATACTATCATCCATCAT 76956 || || ||||||||||| |||| Sbjct 7392 TCCTTCAATACTATCATCTTTCAT 7415 Score = 120 bits (132), Expect = 4e-22 Identities = 114/143 (80%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| |||||||| | ||||||||||||||| ||||||||| ||| || | | || Sbjct 7542 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 7601 Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111 |||||||| |||| | | || ||||| | ||| |||||||| | || || | ||||| Sbjct 7602 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGAAACCCTCATCA 7660 Query 77112 ACATATGCTGAGGTCGTTCTACA 77134 ||||||||||||||| ||||||| Sbjct 7661 ACATATGCTGAGGTCTTTCTACA 7683 >seq7036 Length=357795 Score = 129 bits (142), Expect = 8e-25 Identities = 151/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | |||||| | |||| | || | || |||||| | |||||| Sbjct 206334 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGCACAATGCCA 206393 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 |||||||| |||||||||||| |||||||||||| ||||||||| || || || Sbjct 206394 TTAGATGTCCCATTTGTTCCACGAATATAACTTCCTGTTGCACGAATGTTGTGAACTGAG 206453 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || || ||||| || ||| ||| | |||||| ||||| || ||||| || Sbjct 206454 ACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTATCATATATT 206513 Query 76934 CCCTCTATACTATCATCCATCATG 76957 || || ||||||||||| ||||| Sbjct 206514 CCTTCAATACTATCATCTTTCATG 206537 Score = 105 bits (116), Expect = 1e-17 Identities = 146/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| |||||||| | ||| ||||||||||| || |||||| || ||| | | || | Sbjct 206699 GTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTGAGACATCATATGG 206758 Query 77054 TATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||||||| ||| | | || || || | ||| ||||| || ||||| || | |||||| Sbjct 206759 TATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGAATCCCAACAGCAACCCTCATCAA 206817 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATT-TATTTTCAACAAGTATGATTTTTCCA 77171 |||||| || |||| ||||||| ||| | || | ||||| | ||| || | |||| Sbjct 206818 CATATGTTGGGGTCTTTCTACA-ACTTTTCCTTGGACCTTCAAGAGGTAGGACCTCTCCA 206876 Query 77172 AAGTTTTAAAACCAAAATA 77190 ||||| || |||||||| Sbjct 206877 GGGTTTTGAAGCCAAAATA 206895 Score = 89.7 bits (98), Expect = 7e-13 Identities = 89/114 (78%), Gaps = 6/114 (5%) Strand=Plus/Plus Query 76091 AATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGA---A 76147 |||| |||||| || |||||||||||||||||||| |||||||||| | ||| || Sbjct 204942 AATGTATCTGCAAGACCCTGAACTCCAATACCAATGGGTCTATGTCGCAAATTTGACCTT 205001 Query 76148 ATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGATTT 76201 || ||| ||| || |||||| ||||||| ||| || ||||| || |||||| Sbjct 205002 CTTGCAGTTTC---AACAGGGTAGTAATTAACATCGATTATTTTGTTAAGATTT 205052 >seq7917 Length=1319861 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||||| ||||||| |||| | ||| | ||| || | |||||| Sbjct 94773 CCCCCTTGATCAACATATCGAGCAGTGTCATTAAACACTTGGAGCATCGGGACAATGCCA 94832 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || || | |||||||||||| || ||||| || | |||| |||||| ||| || Sbjct 94833 TTGGAAGATCCATTTGTTCCATGGATGTAACTGCCTGAGGCACAGATATTATGAATGGAG 94892 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 || || |||||||| || ||| || | |||||| |||| || ||||| ||| Sbjct 94893 AGACCAATTCCTCCAGCTGATTTGCTTATGATAGCACACTTCTTCAGGGTATCATATATG 94952 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTA 76975 || || || || ||||| ||||| | |||||| |||||| Sbjct 94953 CCTTCAATGCTGTCATCTTTCATGCACAAAAGAAAGCAGCTA 94994 Score = 96.9 bits (106), Expect = 5e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||| |||||| || | ||| || | ||||||||| |||||| |||| ||||||| Sbjct 94121 CTCTTCTTCATACTGGGAATACAAGTGCTCAAATTCAATTCCCCAGGAATCAGCCAAACC 94180 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAA 76611 || | ||| | || || | ||| ||||| | ||||| || | || | || |||||| Sbjct 94181 AGAAGCATCACTAGGGCAAAACAAGGACCATTTTCCATCATCTCTGACTCTTTCCATAAA 94240 Query 76612 GAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 ||||||||| | ||| |||||| ||| ||||| || | | || |||||| Sbjct 94241 GAGATCAGGAACCCAGAGAGCATAAAAGAGATCACGAGCCCGACATTCTTC 94291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712801482292800