Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1340 104 5e-17 seq1165 104 5e-17 seq1103 104 5e-17 seq1030 104 5e-17 seq965 104 5e-17 seq616 104 5e-17 seq1229 98.7 2e-15 >seq1340 Length=31410901 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 7442990 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 7443049 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 7443050 CCCACGGTGGGC 7443061 >seq1165 Length=25613772 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 13749471 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 13749530 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 13749531 CCCACGGTGGGC 13749542 >seq1103 Length=43299053 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 36470531 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 36470472 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 36470471 CCCACGGTGGGC 36470460 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 39218976 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 39219035 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 39219036 CCCACGGTGGGC 39219047 >seq1030 Length=25649276 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 2537572 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 2537513 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2537512 CCCACGGTGGGC 2537501 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 21462077 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 21462136 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 21462137 CCCACGGTGGGC 21462148 >seq965 Length=51047765 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 6299131 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 6299072 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 6299071 CCCACGGTGGGC 6299060 >seq616 Length=36375926 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 12314865 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 12314806 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 12314805 CCCACGGTGGGC 12314794 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||||||||||||||||||||||||| || || |||| || |||||||||||||||||| Sbjct 13871539 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 13871598 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 13871599 CCCACGGTGGGC 13871610 >seq1229 Length=21133251 Score = 98.7 bits (108), Expect = 2e-15 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 165695 GGACTTAAAACGCTTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTG 165754 |||||| ||| |||||||||||||||||||||||||||| || || |||| || ||| Sbjct 8495198 GGACTTTCAACTGGTGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTG 8495257 Query 165755 GTCGTGGGTTCGAGCCCCACGATGGGC 165781 ||||| |||||||||||||| ||||| Sbjct 8495258 GTCGTTTGTTCGAGCCCCACGGTGGGC 8495284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057805052388740