Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1030 158 1e-33 seq1229 125 7e-24 >seq1030 Length=25649276 Score = 158 bits (174), Expect = 1e-33 Identities = 565/873 (65%), Gaps = 19/873 (2%) Strand=Plus/Minus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 |||| || || | ||| | ||||| ||||| ||||| || || | || || || || Sbjct 1352406 TTTGATATTCCCCAACTCTCTTTTCAAAAAAATTAGTCTTCCCTTGAAGCGAGATCAGCT 1352347 Query 16734 CCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 |||| ||||||||||||| | | | | || |||||| || | | | | Sbjct 1352346 CCATCCAATCAAAAGGATTCGCCACACCGTACAGCTTCCCGTACCCAAGCGCACCCAACA 1352287 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGAC 16853 |||||||||| ||||| ||||| || || | ||| ||||| | ||||| || | | || Sbjct 1352286 ATCTATCCGCGACAAACTCTATGTACTGACTCATCAATTCTCCATTCATCCCCACCA-AC 1352228 Query 16854 GTAC-CGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAA-TAAT 16911 | | ||| || || || || ||| | |||||| | ||||| ||||| | ||| Sbjct 1352227 GCGCACGGCAGCGCATCGCACACAAACTCTCTCTCTATCTCCACCGCCTCCTTCACTAAC 1352168 Query 16912 ACTAGCAACTCGTTCCTCGGACGGTGTA----TGTTTAAGATGTTTAAACATCAGACATG 16967 | || ||| |||||| | | | ||| ||| ||| ||| || | Sbjct 1352167 GCCTTCA-CTCTCTCCTCGCTTAGCTTCGTCCTCAATAAACTGT----ACAACAGGCACG 1352113 Query 16968 CGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGG 17027 |||||||||| || | ||||| |||| ||| | ||||| || ||||| || || | Sbjct 1352112 CGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTTAATCCCG 1352053 Query 17028 GCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATAC 17087 |||| || || || || | ||||||||||||| || ||| || ||||| || | Sbjct 1352052 GCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATCC 1351993 Query 17088 CCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCC 17147 |||| ||| | |||||||||||||||| || ||| | ||| | || || |||| Sbjct 1351992 CCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAGCCGT--CG-ATCC 1351936 Query 17148 ATTTCTGCACCCACTCGGCTT--TTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAA 17205 | || | ||||| ||||| ||||| | ||| | ||| || ||||| | ||| Sbjct 1351935 AATTTAACGCCCACGTGGCTTTCTTTGC--GACGCAGGGAACCGTCTCGATGGCGTGAAA 1351878 Query 17206 TAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTC 17265 | | ||||| | ||| | || || || || | || || ||||||||| Sbjct 1351877 GAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACATTTC 1351818 Query 17266 GGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTG 17325 |||||| |||||||| ||||| || || || ||||| ||| || || || || | || Sbjct 1351817 GGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGAGCCTCGGCGACCTG 1351758 Query 17326 AACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAA 17385 || ||| ||| | | | || || || ||| |||||||||||| || ||||| Sbjct 1351757 GACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCGAA 1351698 Query 17386 AAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTT 17445 || || | | ||| | | ||| | || ||||| | || || | ||||| Sbjct 1351697 GAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGGCG 1351638 Query 17446 TAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATA 17505 | ||||| || | ||| ||||| || | |||||||| || | || || || || Sbjct 1351637 GAGATCTTGCGAAAGATCAACTTCCTCAGCAGTCCAAAACGACGCTTCGGCTTTCTTGTA 1351578 Query 17506 CATATTCCAAATATCATTGTATTGTATGGGGAA 17538 ||| | |||||| | ||| || || ||||| Sbjct 1351577 CATTTCCCAAATTTGTGGGTACTGAATCGGGAA 1351545 >seq1229 Length=21133251 Score = 125 bits (138), Expect = 7e-24 Identities = 311/467 (67%), Gaps = 5/467 (1%) Strand=Plus/Minus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| || || ||||||||||| || | ||| || |||| ||| || ||||| || | Sbjct 20051133 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGA 20051074 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | || | || ||||| || || || || ||||||||||||||| ||| || | Sbjct 20051073 AGGTTAGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCCG 20051014 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | |||||||| || || ||| | |||||||| || | || || ||| | ||| | Sbjct 20051013 AGAAGAATATCCCTTCCACGCAGGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAGC 20050954 Query 17136 TGTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTA 17195 || || ||||| || | |||| ||||| |||| | ||| || |||||| | Sbjct 20050953 CGT--CG-ATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACCGTTTCAA 20050897 Query 17196 TGGCCTTAAATAA-TTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 ||| |||||| ||| ||||| | || |||| ||||| || | || || Sbjct 20050896 AGGCGCGAAATAAGCGGCTC-TTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGC 20050838 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 ||||||||||||||| |||||||| ||||| || || || ||||| ||| || || Sbjct 20050837 GAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCC 20050778 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCG 17374 || | | ||| ||||| ||| | | || || |||||| ||||| || || Sbjct 20050777 TCGGAGACTTGGACTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCATCC 20050718 Query 17375 CTCGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTC 17421 |||||||| || || | | ||| | ||||| | ||| ||||| Sbjct 20050717 GAGGCGGCGAAGAAGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTC 20050671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517536555890640