Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq1165 84.2 2e-11 >seq1165 Length=25613772 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || ||| ||||||| ||||||| || || || || ||| || | | Sbjct 10936124 AATGCAGATCTTCGTCAAAACCCTGACGGGAAAGACGATCACTCTGGAAGTCGAGAGCTC 10936183 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | | | ||| |||||| ||||||||||| | || ||||| Sbjct 10936184 TGACACCATTGACAACGTCAAGGCAAAAATCCAGGATAAAGAAGGGATCCCACCTGATCA 10936243 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || | || |||||||| || || || ||||| ||| | || | || |||||||| Sbjct 10936244 GCAGCGCCTGATCTTTGCTGGGAAGCAGCTGGAGGATGGAAGGACGCTTGCGGATTACAA 10936303 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 ||||||||||| || |||||||| ||||||| || Sbjct 10936304 CATTCAGAAGGAGTCGACTCTTCATCTGGTGTTGCG 10936339 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428328701957690