Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq1 122 1e-22 seq1165 96.9 5e-15 >seq1 Length=28940139 Score = 122 bits (134), Expect = 1e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || ||||| ||||| || ||| | ||| | ||| | Sbjct 21029657 ATGCAGATTTTTGTGAAAACCCTGACAGGAAAAACAATCACTCTTGAGGTAGAAAGTTCT 21029716 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| ||||||||||| || || ||||| ||||| ||||| Sbjct 21029717 GACACCATTGACAATGTGAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCAGATCAG 21029776 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| |||||||| ||||| || | || ||| | | || | | ||| ||||| Sbjct 21029777 CAGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGAAGGACTCTTGCAGACTATAAC 21029836 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| ||| | || |||||| | || | || |||||||| Sbjct 21029837 ATCCAGAAAGAATCCACTCTCCACTTGGTTCTTCGCCTCCGTGGTGGTAT 21029886 Score = 113 bits (124), Expect = 7e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| ||||||| || || || |||||||| || | ||| | ||| Sbjct 21032724 ATGCAGATCTTTGTAAAGACCCTCACTGGAAAAACTATCACCCTTGAGGTGGAAAGCTCC 21032783 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| ||| | ||| || ||||| || || ||||| || ||||| || || Sbjct 21032784 GACACTATTGACAATGTCAAAGCCAAGATTCAGGACAAGGAAGGGATCCCACCAGACCAG 21032843 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||||||||||||||| || |||||| | |||||| | || || | | || ||||| Sbjct 21032844 CAAAGGCTTATTTTTGCTGGCAAACAACTTGAGGATGGCCGCACCCTTGCCGACTATAAC 21032903 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || || || || | || |||| | ||| || ||||||| || Sbjct 21032904 ATTCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGTCTAAGAGGTGGAAT 21032953 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || || ||||||||| | ||| ||||| | Sbjct 20996261 ATGCAGATTTTTGTGAAAACCCTGACTGGTAAGACTATAACTTTGGAGGTTGAAAGCTCT 20996320 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | || || || || || || || || || |||||||||||| Sbjct 20996321 GACACGATCGACAATGTCAAGGCCAAGATACAGGACAAGGAGGGCATCCCACCTGATCAA 20996380 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | || ||||| || |||||| | || ||| |||| || | | || || || Sbjct 20996381 CAGAGGTTAATCTTTGCCGGCAAACAACTTGAAGATGGTCGTACTCTTGCTGACTACAAC 20996440 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || ||||| | |||||||| | ||| | || ||||| || Sbjct 20996441 ATCCAGAAGGAGTCAACCCTCCATTTGGTGCTTCGTCTCCGTGGTGGCAT 20996490 Score = 95.1 bits (104), Expect = 2e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| ||| | ||||| || || || ||||| || ||| | ||| | || Sbjct 21033636 ATGCAAATTTTTGTGAAGACTCTCACTGGAAAAACAATCACTCTGGAGGTAGAGAGTTCG 21033695 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || ||| |||| | || || || |||||||| || || || ||||| || || Sbjct 21033696 GACACTATTGATAATGTGAAGGCCAAGATCCAAGATAAGGAGGGCATTCCACCAGACCAG 21033755 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||| | ||||||||||| || || | || ||| | | || | | |||||| || Sbjct 21033756 CAGAGGTTGATTTTTGCAGGCAAGCAGCTTGAAGATGGGAGGACCCTTGCAGATTACAAC 21033815 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTT 124750 ||||| || ||||| || |||||||||| || Sbjct 21033816 ATTCAGAAGGAATCCACACTGCATTTGGTGTT 21033847 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || ||| | || || || || || |||||||||||| | ||| ||||| | Sbjct 21029429 ATGCAGATTTTTGTGAAAACCCTGACTGGTAAAACTATAACTTTGGAGGTTGAAAGCTCT 21029488 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || ||||| ||| | || || ||||| || || || || || || || ||||| Sbjct 21029489 GACACAATCGACAATGTCAAGGCTAAGATTCAGGACAAGGAGGGCATCCCTCCCGATCAG 21029548 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | || ||||| || |||||| | || ||| | || || ||| || || || Sbjct 21029549 CAGAGATTGATCTTTGCTGGCAAACAACTTGAAGATGGCCGTACTCTAGCTGACTACAAC 21029608 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || || ||||| | || ||||| | ||| | || |||||||| Sbjct 21029609 ATCCAGAAGGAGTCAACCCTCCACTTGGTGCTCCGTCTCCGTGGTGGTAT 21029658 >seq1165 Length=25613772 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || || || ||||| || || | ||| | || | Sbjct 10936353 ATGCAGATTTTCGTCAAGACTCTTACTGGGAAAACAATTACCCTGGAGGTGGAGAGTTCT 10936412 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| ||| ||| | || || ||||| ||||| ||||| || ||||||||||| Sbjct 10936413 GATACCATTGACAATGTCAAGGCTAAGATTCAGGATAAGGAAGGGATTCCACCTGATCAG 10936472 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || ||||| || ||||| || || || | |||||| | || | |||| |||||||| Sbjct 10936473 CAGAGGCTCATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGTAATTTAGCTGATTATAAC 10936532 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGT 124766 |||||||| || || || | ||| | || | ||| | || || ||| Sbjct 10936533 ATTCAAAAGGAGTCCACCCTCCATCTTGTCCTCCGTCTTCGTGGGGGT 10936580 Score = 95.1 bits (104), Expect = 2e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || || | || || ||||| || || || || ||| | ||| | || || | Sbjct 10868231 ATGCAGATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTCGAGGTGGAGAGTTCA 10868290 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| |||| | || || || ||||| || || || || ||||| ||||| Sbjct 10868291 -GATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAGGGGATCCCACCAGATCA 10868349 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | || ||||| ||||||||||| || || | || || || | || ||||| Sbjct 10868350 ACAAAGATTGATCTTTGCTGGAAAACAATTGGAAGACGGCCGTACGTTGGCTGACTATAA 10868409 Query 124718 TATTCAAAAAGAATCAACT 124736 ||| || ||||| |||||| Sbjct 10868410 TATCCAGAAAGAGTCAACT 10868428 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGA-AGCAAA 124597 ||||| || || | || || ||||| || || || || ||| | ||| | || || | Sbjct 10928344 ATGCAGATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTCGAGGTGGAGAGTTCA 10928403 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| ||| |||| | || || || ||||| || ||||| || ||||| ||||| Sbjct 10928404 -GATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGATCA 10928462 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 |||||| | || ||||| || |||||||| || || | || || || | || ||||| Sbjct 10928463 ACAAAGATTGATCTTTGCCGGGAAACAATTGGAAGACGGCCGCACGTTGGCTGACTATAA 10928522 Query 124718 TATTCAAAAAGAATCAACT 124736 || || ||||| |||||| Sbjct 10928523 CATCCAGAAAGAGTCAACT 10928541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755442798406400