Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq1165 113 7e-20 seq1340 109 8e-19 seq1 87.8 3e-12 >seq1165 Length=25613772 Score = 113 bits (124), Expect = 7e-20 Identities = 111/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATC 146106 ||||| || || || || | ||||| || | || || || ||| || || |||||||| Sbjct 9951258 GTTCCTCCCCTGAGCCTCAGGACCAAGTGAAGCGTCGACTCCTTTTGA-ATGTTATAATC 9951316 Query 146107 TGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGG 146166 || ||| ||||||| ||| || |||||||| ||||||||||||| ||| |||||||| || Sbjct 9951317 TGCAAGCGTTCTGCCATCTTCCAATTGTTTACCAGCAAAAATCAGTCTCTGCTGATCGGG 9951376 Query 146167 AGGAATTCCTTCTTTATCTTG 146187 |||||| ||||| || || || Sbjct 9951377 AGGAATGCCTTCCTTGTCCTG 9951397 >seq1340 Length=31410901 Score = 109 bits (120), Expect = 8e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||| || || || || | ||||| || | || || || || || |||||||| Sbjct 29410138 GTTCCTCCCCTGAGCCTCAGGACCAAGTGAAGTGTTGACTCCTTCTGAATGTTATAATCA 29410079 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | |||||| | || ||| || |||||||| ||||||||||||||||| |||||||||||| Sbjct 29410078 GCAAGAGTACGGCCATCTTCCAATTGTTTCCCAGCAAAAATCAATCTCTGCTGATCCGGA 29410019 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||| ||||| || || || Sbjct 29410018 GGAATGCCTTCCTTGTCCTG 29409999 >seq1 Length=28940139 Score = 87.8 bits (96), Expect = 3e-12 Identities = 152/229 (66%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| || | ||||| || |||||||| | || ||||| || || || ||||||| Sbjct 21033864 TTCCTCCACGCAGTCTCAACACCAAATGCAGTGTGGATTCCTTCTGAATGTTGTAATCTG 21033805 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||| || || | ||| || | || || || ||||||||||| || ||||| || || | Sbjct 21033804 CAAGGGTCCTCCCATCTTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGTG 21033745 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||| || || |||||||| ||| || ||||| |||| Sbjct 21033744 GAATGCCCTCCTTATCTTGGATCTTGGCCTTCACATTATCAATAGTGTCCGAACTCTCTA 21033685 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 | || || ||||||||||| || || | || || | || |||||||| Sbjct 21033684 CCTCCAGAGTGATTGTTTTTCCAGTGAGAGTCTTCACAAAAATTTGCAT 21033636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743513406876160