Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1030 102 8e-17 seq1340 89.7 5e-13 seq1229 84.2 2e-11 >seq1030 Length=25649276 Score = 102 bits (112), Expect = 8e-17 Identities = 120/159 (75%), Gaps = 4/159 (3%) Strand=Plus/Minus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 ||||| ||||| || || || |||||||||| || | |||||||| ||||||||| Sbjct 1352116 CACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTTAAT 1352057 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGAT-CCGGAAAAGAA 14322 || ||||| || || || ||||| | ||||||||| || || || | || || ||||| Sbjct 1352056 CCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGC-GCAAAAACTCCCTGAGAAGAA 1351998 Query 14323 TATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCC 14361 || ||||| || ||||||||| ||||||| ||||| Sbjct 1351997 AATCCCCTCCACGCAAGCAAACGCGATTAATC--TCTCC 1351961 >seq1340 Length=31410901 Score = 89.7 bits (98), Expect = 5e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || ||||| ||||| ||||| |||||||||||| ||||| |||||||| || || || Sbjct 2869524 CAAGCAAAGTCACAGTGAAGCCCCTCATCTCTAGATATAAGCTCGTTTGAGAACGTCAAA 2869465 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 14302 |||||||||| ||| | ||||| | ||| ||||| ||| Sbjct 2869464 CCTGGCATCAGTCCCCTCTTTTTAAGCCAGAATATGGCA 2869426 >seq1229 Length=21133251 Score = 84.2 bits (92), Expect = 2e-11 Identities = 118/162 (73%), Gaps = 4/162 (2%) Strand=Plus/Minus Query 14201 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 14260 || ||||| ||||| || || || || ||||||| || || ||||| || || ||| Sbjct 20051128 AAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGAAGGTT 20051069 Query 14261 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAG 14320 | || ||||| || || || ||||| ||||||||||| || ||| || || ||| Sbjct 20051068 AGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCCGAGAAG 20051009 Query 14321 AATATTCCCTCAACTGCAG-CAAACGCTATTAATCGTTCTCC 14361 ||||| || || || |||| |||||||||| | || ||||| Sbjct 20051008 AATATCCCTTCCAC-GCAGGCAAACGCTATCAGTC--TCTCC 20050970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482337171010640