Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq1030 163 4e-35 seq1229 150 2e-31 >seq1030 Length=25649276 Score = 163 bits (180), Expect = 4e-35 Identities = 408/616 (66%), Gaps = 8/616 (1%) Strand=Plus/Minus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| || || |||||||||||||| |||||||| |||| || || ||||| || | Sbjct 1352124 ACAACAGGCACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGA 1352065 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGAT-CCG 33692 | || | ||| ||||||| || |||||||| ||||||||||| | || || | || Sbjct 1352064 ATGTTAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAAAAACTCCCT 1352006 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA---CCGGCG 33749 || ||||| || || || || |||||| || || | |||||| | || | | | Sbjct 1352005 GAGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAG 1351946 Query 33750 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809 | ||| ||||| ||| ||||| ||| |||||| || || || | ||| || Sbjct 1351945 CCGTC---GATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCG 1351889 Query 33810 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33869 ||||| | ||||||| ||| ||||| | ||||| | ||||| || | | || Sbjct 1351888 ATGGCGTGAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGC 1351829 Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33929 |||||||| || || ||||| || ||||| || || || |||||||| | |||| Sbjct 1351828 GAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGAGCC 1351769 Query 33930 TCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCA 33989 |||| | ||| || || || || | | | || | || || || || || || Sbjct 1351768 TCGGCGACCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCG 1351709 Query 33990 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 34049 |||||| || || || | || || | | || | || ||||| | ||||| Sbjct 1351708 GAGGCTGCGAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCC 1351649 Query 34050 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 34109 | ||| | || ||||| || | ||| ||||| || | |||||||| || || || Sbjct 1351648 TCCCAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCAGTCCAAAACGACGCTTCG 1351589 Query 34110 GCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTT 34169 || || || ||||| | ||| || | | || || || ||||| || ||||| || Sbjct 1351588 GCTTTCTTGTACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATCGATCG 1351529 Query 34170 GGATTTGGTGCAAGGA 34185 |||||||| || |||| Sbjct 1351528 GGATTTGGGGCTAGGA 1351513 Score = 91.5 bits (100), Expect = 2e-13 Identities = 108/144 (75%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 |||||| |||||||| | |||||||| || || || |||||| ||| || | | || Sbjct 17554602 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 17554661 Query 63722 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63780 ||| || | |||||| || || ||||| | ||| |||||||| | | || | ||| | Sbjct 17554662 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGATACCCTCATCA 17554720 Query 63781 ACATGTGCTGAGGTCTTTCAACAA 63804 |||| |||||||||||||| |||| Sbjct 17554721 ACATATGCTGAGGTCTTTCTACAA 17554744 >seq1229 Length=21133251 Score = 150 bits (166), Expect = 2e-31 Identities = 389/587 (66%), Gaps = 8/587 (1%) Strand=Plus/Minus Query 33574 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAA 33633 ||| ||| || |||||||||||||| || || || |||| |||| ||||| || | Sbjct 20051133 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGA 20051074 Query 33634 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGG 33693 | || || || ||||||| || |||||||| | ||||||||| | ||| || | Sbjct 20051073 AGGTTAGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCCG 20051014 Query 33694 AAAAGAAGATTCCTTCTACTGCA-GCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCG 33749 | ||||| || ||||| || ||| ||||| || || |||||||| | || | | | | Sbjct 20051013 AGAAGAATATCCCTTCCAC-GCAGGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAG 20050955 Query 33750 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 33809 | ||| ||||| ||| | |||||||||||||| || || || |||| |||||| Sbjct 20050954 CCGTC---GATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACCGTTTCA 20050898 Query 33810 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 33869 | ||| ||| | | | ||||| | | ||| | || || || | | || Sbjct 20050897 AAGGCGCGAAATAAGCGGCTCTTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGC 20050838 Query 33870 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 33929 |||||||| || || ||||| || ||||| || || || |||||||| | ||| Sbjct 20050837 GAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCC 20050778 Query 33930 TCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCA 33989 |||| | || |||||| | || | | || | ||||| || |||||||| Sbjct 20050777 TCGGAGACTTGGACTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCATCC 20050718 Query 33990 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 34049 ||| || || || || | || || | || || | ||| ||||| | ||||| Sbjct 20050717 GAGGCGGCGAAGAAGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGCGGTTAGGGAT 20050658 Query 34050 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 34109 | ||| | ||| || | || | || || || ||| | ||||||||||| || || Sbjct 20050657 TCCCACTGGCGGATGTCCTGCGACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTTCG 20050598 Query 34110 GCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 34156 || || || ||||| | |||||| || | || |||||||| || || Sbjct 20050597 GCTTTCTTGTACATTTCCCAGATTTCCGGGTACTGGATTGGAAACAT 20050551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629806593937440