Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08]
1,398 sequences; 301,364,702 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq1030 113 4e-20
seq1229 82.4 7e-11
>seq1030
Length=25649276
Score = 113 bits (124), Expect = 4e-20
Identities = 124/164 (76%), Gaps = 2/164 (1%)
Strand=Plus/Plus
Query 38390 AACTAGACATT--TGAGGCAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTAT 38447
||||| |||| || ||| ||||||||| || ||||| | ||||||||||||||| |
Sbjct 17554578 AACTAAACATGCCTGGGGCCTTGGAGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGT 17554637
Query 38448 GAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTG 38507
||||||| ||| |||| || ||||||| || || ||| |||||| | |||
Sbjct 17554638 GAACCATCTTTGGGACATCATATGGTATGTTTTAATAGCAGAATCAATATCATCCTTGTG 17554697
Query 38508 AATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTA 38551
||| || | |||||||||||| | |||||| || ||||||||||
Sbjct 17554698 AATTCCAATAGATACCCTCATCAACATATGCTGAGGTCTTTCTA 17554741
>seq1229
Length=21133251
Score = 82.4 bits (90), Expect = 7e-11
Identities = 104/143 (73%), Gaps = 0/143 (0%)
Strand=Plus/Plus
Query 38409 TGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATA 38468
||| ||||| || ||||| | ||| ||||||||||| | |||||| || ||||
Sbjct 17548568 TGGTGTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTGAGACATCAT 17548627
Query 38469 ATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCAT 38528
|| ||||||| || || ||| || ||| | |||||| || | || ||||||||
Sbjct 17548628 ATGGTATGTTTTGATAGCAGAATCAATGTCATCCTTGTGAATCCCAACAGCAACCCTCAT 17548687
Query 38529 TAGCATATGTTGTGGTCTTTCTA 38551
| ||||||||| ||||||||||
Sbjct 17548688 CAACATATGTTGGGGTCTTTCTA 17548710
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468516612529120
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |