Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq1030 152 7e-32 seq1229 129 8e-25 >seq1030 Length=25649276 Score = 152 bits (168), Expect = 7e-32 Identities = 397/603 (66%), Gaps = 2/603 (0%) Strand=Plus/Minus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 ||| || || |||||||||||||| |||||||| |||| || || ||||| || | Sbjct 1352124 ACAACAGGCACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGA 1352065 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 36268 | || | ||| ||||||| || |||||||| ||||||||||| | |||||| | || Sbjct 1352064 ATGTTAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAAAAACTCCCT 1352006 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 36328 || |||||||| || || || ||||| || || | |||||| | || | | Sbjct 1352005 GAGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAG 1351946 Query 36329 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATA 36388 | | ||||| ||| ||||| ||| |||||| || || || | ||||| || Sbjct 1351945 CCGTCGATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATG 1351886 Query 36389 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTA 36448 || | ||||||| ||| ||||| | ||||| | || || || | | || Sbjct 1351885 GCGTGAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAG 1351826 Query 36449 TACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCG 36508 |||||||| || || ||||| || ||||| ||||| || |||||||| | ||||||| Sbjct 1351825 TACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGAGCCTCG 1351766 Query 36509 GTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTG 36568 | | ||| || || || || | | | || | || || || || ||||| | Sbjct 1351765 GCGACCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAG 1351706 Query 36569 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTC 36628 ||||| || || || | || || | | || | || |||| | ||||| | | Sbjct 1351705 GCTGCGAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCC 1351646 Query 36629 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 36688 || | || ||||| || | ||| ||||| || | |||||||| || || || || Sbjct 1351645 CAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCAGTCCAAAACGACGCTTCGGCT 1351586 Query 36689 TTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTTGA 36748 || || ||||| | ||| || | | || ||||| || || || ||||| || || Sbjct 1351585 TTCTTGTACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATCGATCGGGA 1351526 Query 36749 TTT 36751 ||| Sbjct 1351525 TTT 1351523 Score = 96.9 bits (106), Expect = 5e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 66216 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275 ||||||||||| | || | || || | |||| | || | || |||||| | ||| ||| Sbjct 17554273 CCTCCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCCA 17554332 Query 66276 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT 66335 |||||||| || || || || ||||| |||||| |||||||||| || || ||| Sbjct 17554333 TTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACTGAG 17554392 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 | ||| || || || || ||| ||| | || || || || || |||||||| Sbjct 17554393 ACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGATT 17554452 Query 66396 CCCTCTATACTATCATCCATCAT 66418 || || ||||||||||| |||| Sbjct 17554453 CCTTCAATACTATCATCTTTCAT 17554475 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 66455 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 66514 |||||| |||||||| | |||||||| || || || |||||| ||| || | | || Sbjct 17554602 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 17554661 Query 66515 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 66573 ||| || | |||||| || || ||||| | ||| |||||||| | | || | ||| | Sbjct 17554662 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGATACCCTCATCA 17554720 Query 66574 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 66633 |||| |||||||||||||| || | ||| | | || || | |||||| | || | Sbjct 17554721 ACATATGCTGAGGTCTTTCTACAACCTTCCCTTGGACCTTTAAGAGGTAGGACCTCTCAA 17554780 Query 66634 AAGTTTTAAAACCAAAATA 66652 ||||| || ||||| || Sbjct 17554781 GGGTTTTGAAGCCAAAGTA 17554799 >seq1229 Length=21133251 Score = 129 bits (142), Expect = 8e-25 Identities = 384/587 (65%), Gaps = 8/587 (1%) Strand=Plus/Minus Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 ||| ||| || |||||||||||||| || || || |||| |||| ||||| || | Sbjct 20051133 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGA 20051074 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 36268 | || || || ||||||| || |||||||| | ||||||||| | |||| || || Sbjct 20051073 AGGTTAGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCG-CGCAGAAACTGCCC 20051015 Query 36269 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCA 36325 || ||||| || ||||| || ||||| || || |||||||| | || | | | Sbjct 20051014 GAGAAGAATATCCCTTCCACGCAGGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAG 20050955 Query 36326 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 36385 | ||| ||||| ||| | |||||||||||||| || || || |||| || || Sbjct 20050954 CCGTC---GATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACCGTTTCA 20050898 Query 36386 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 36445 | || ||| | | | ||||| | | ||| | || || || | | || Sbjct 20050897 AAGGCGCGAAATAAGCGGCTCTTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGC 20050838 Query 36446 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCC 36505 |||||||| || || ||||| || ||||| ||||| || |||||||| | ||| Sbjct 20050837 GAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCC 20050778 Query 36506 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 36565 |||| | || |||||| | || | | || | ||||| || ||||| || Sbjct 20050777 TCGGAGACTTGGACTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCATCC 20050718 Query 36566 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTA 36625 ||| || || || || | || || | || || | ||| |||| | ||||| Sbjct 20050717 GAGGCGGCGAAGAAGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGCGGTTAGGGAT 20050658 Query 36626 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 36685 | ||| | ||| || | || | || || || ||| | ||||||||||| || || Sbjct 20050657 TCCCACTGGCGGATGTCCTGCGACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTTCG 20050598 Query 36686 GCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 36732 || || || ||||| | |||||| || | || || |||||||| || Sbjct 20050597 GCTTTCTTGTACATTTCCCAGATTTCCGGGTACTGGATTGGAAACAT 20050551 Score = 89.7 bits (98), Expect = 7e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 66216 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 66275 ||||| ||||| | || | || || | |||| | || | || |||||| | ||| ||| Sbjct 17548207 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGCACAATGCCA 17548266 Query 66276 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGAT 66335 || ||||| ||||| || || ||||| ||||| |||||||||| || || ||| Sbjct 17548267 TTAGATGTCCCATTTGTTCCACGAATATAACTTCCTGTTGCACGAATGTTGTGAACTGAG 17548326 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 | ||| || || || || ||| ||| | || || || || |||||||| || Sbjct 17548327 ACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTATCATATATT 17548386 Query 66396 CCCTCTATACTATCATCCATCATG 66419 || || ||||||||||| ||||| Sbjct 17548387 CCTTCAATACTATCATCTTTCATG 17548410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658161298430320