Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq1165 113 4e-20 seq1 102 8e-17 >seq1165 Length=25613772 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || |||||||||||||| |||||| || |||| ||||||||| || || ||| Sbjct 10936093 GTGGATTCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGTTGCTTCCCA 10936034 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| ||||| ||||| || || || || || || ||||| ||| || || Sbjct 10936033 GCAAAGATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTG 10935974 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | |||||||| | |||||| || | ||| | ||||||||||| | ||| Sbjct 10935973 ACGTTGTCGATTGTGTCGGAGCTCTCCACTTCGAGGGTGATTGTCTTGCCGGTGAGGGTT 10935914 Query 139748 TTTACGAATATTTGCAT 139764 || || ||||| ||||| Sbjct 10935913 TTCACAAATATCTGCAT 10935897 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || | ||| | || | ||| | || ||||| || || ||||| ||||| Sbjct 10317666 GCCGCCGCGGAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCCGC 10317607 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || |||| | ||| |||||||| || || || ||||||| || ||||| || || || Sbjct 10317606 CAAGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAGCCGCTGCTGGTCCGGTGG 10317547 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| || || | | || | ||||||| | |||||| Sbjct 10317546 AATCCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATCGTGTCGGAGCTCTCCAC 10317487 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| | || | |||||||||||||| ||||| || || || ||||| Sbjct 10317486 CTCGAGAGTGATGGTCTTGCCGGTCAAAGTTTTCACAAAGATCTGCAT 10317439 Score = 105 bits (116), Expect = 7e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| ||| || || ||||| || || |||||| || |||| ||||||||||||| Sbjct 12024133 TGAAGCGTCGATTCCTTTTGGATATTGTAATCGGCCAAGGTGCGGCCGTCTTCGAGCTGT 12024074 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || || || |||||||||| ||||| || ||||| || ||||| ||||| ||| || Sbjct 12024073 TTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCTTGGATCTTG 12024014 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 || | | || | ||||||| | ||| || || | || | ||||||||||| Sbjct 12024013 GCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACTTCGAGAGTAATGGTCTTGCCGGTT 12023954 Query 139742 AACGTTTTTACGAATATTTGCAT 139764 | ||||| ||||| || ||||| Sbjct 12023953 AGGGTTTTCACGAAGATCTGCAT 12023931 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| ||||||||||| |||||| | || | || |||||||| || || Sbjct 10318091 GTGGACTCCTTTTGAATGTTGTAATCGGCGAGAGTCCGGCCATCCTCGAGCTGCTTGCCG 10318032 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || | ||||| || ||||| || || |||||||| ||| || || Sbjct 10318031 GCGAAGATGAGCCTCTGCTGGTCCGGAGGAATCCCCTCTTTGTCCTGGATCTTGGCCTTC 10317972 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||||| | ||||||||| | ||| | |||||| ||||||||||| Sbjct 10317971 ACGTTGTCGATCGTGTCGGAGCTCTCCACCTCCAGGGTAATCGTCTTCCCGGTCAACGTC 10317912 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 10317911 TTGACGAAGATCTGCAT 10317895 Score = 96.9 bits (106), Expect = 3e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||||| ||| ||||| ||||||||||||||||| | || || ||||| Sbjct 9951279 ACCAAGTGAAGCGTCGACTCCTTTTGAATGTTATAATCTGCAAGCGTTCTGCCATCTTCC 9951338 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 | |||||||||||| | ||||| | |||||||||||||| |||||||| ||||| Sbjct 9951339 AATTGTTTACCAGCAAAAATCAGTCTCTGCTGATCGGGAGGAATGCCTTCCTTGTC 9951394 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 ||||| || | ||| | ||| || || || || |||||||||||| || |||| | Sbjct 10317881 CGCAACACAAGGTGGAGCGTGGATTCCTTCTGGATGTTATAATCGGCCAGGGTGCGGCCG 10317822 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || ||||| || || || |||| || | ||||| || || || || ||||| ||| Sbjct 10317821 TCCTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGGTCCGGGGGGATCCCTTCCTTG 10317762 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||||| | ||||||||| | ||| | | Sbjct 10317761 TCCTGGATCTTCGCCTTCACGTTGTCGATCGTGTCGGAGCTCTCCACCTCCAGGGTGATC 10317702 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| ||||||| || || ||||| || ||||| Sbjct 10317701 GTCTTCCCGGTCAGAGTCTTGACGAAGATCTGCAT 10317667 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 139562 TGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGT 139621 |||| || ||||| || || ||||| |||||| || |||| ||| |||||||| Sbjct 10816416 TGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCGTCCTCGAGCTGC 10816357 Query 139622 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTT 139681 || |||||| |||| || | ||||| || || || || || || ||||| ||| || Sbjct 10816356 TTTCCAGCAAAGATAAGCCTCTGCTGGTCCGGCGGAATTCCCTCCTTGTCTTGGATCTTG 10816297 Query 139682 TGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTC 139741 |||| | || | ||||| | | ||| || || | || | || ||||||||| Sbjct 10816296 GCCTTTACGTTGTCGATGGTGTCCGAGCTCTCGACTTCGAGAGTAATAGTTTTGCCGGTC 10816237 Query 139742 AACGTTTTTACGAATATTTGCATA 139765 || ||||| ||||| || |||||| Sbjct 10816236 AAGGTTTTCACGAAGATCTGCATA 10816213 Score = 86.0 bits (94), Expect = 6e-12 Identities = 142/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATC-GCTCATTGTGCTCGAGTCTTCGAGCTGTTTACC 139626 || ||||| || |||||||||||||| ||| | || | || || ||||| || || Sbjct 10817550 GTGGACTCCTTCTGAATGTTATAATCAGCT-AAAGTACGGCCATCCTCAAGCTGCTTCCC 10817492 Query 139627 AGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTT 139686 |||| |||| || | |||||||| || || || ||||| ||||| ||| | |||| | Sbjct 10817491 AGCAAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTC-CTGAATCTTTGCCT 10817433 Query 139687 TAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACG 139745 || | | || | || || | | ||||||||| | || | ||||| || ||||| | Sbjct 10817432 TAACATTATCAATAGTATCTGAGCTCTCCACCTCCAGAGTAATAGTCTTCCCAGTCAAGG 10817373 Query 139746 TTTTTACGAATATTTGCATA 139765 | || || ||||| |||||| Sbjct 10817372 TCTTGACAAATATCTGCATA 10817353 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 139550 CGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAG 139609 |||| ||| | |||| || ||||| || || ||||||||||| | || || Sbjct 10817340 CGCAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAATCCGCAAGAGTCCTTCCA 10817281 Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || || |||||||| ||||| |||||| ||| |||||||| || || || ||||| ||| Sbjct 10817280 TCCTCAAGCTGTTTGCCAGCGAAGATCAAACGCTGCTGATCCGGTGGAATTCCTTCCTTG 10817221 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||||||| || | | || | |||||| | | ||| || || | || | Sbjct 10817220 TCTTGGATTTTTGCCTTGACATTGTCAATTGTGTCTGAGCTCTCAACTTCCAAAGTAATT 10817161 Query 139730 GTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || || | || || || ||||| ||||| Sbjct 10817160 GTTTTCCCAGTAAGGGTCTTAACAAATATCTGCAT 10817126 >seq1 Length=28940139 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||| | || || || || || || ||||| || | ||||| || ||| Sbjct 20995785 ACCAAGTGGAGGGTTGATTCCTTCTGGATATTATAGTCAGCGAGTGTGCGACCATCCTCG 20995726 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 ||||||||||||||| |||| || | |||||||| || || || ||||| ||||| | Sbjct 20995725 AGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGGATCCCTTCCTTGTCCTGG 20995666 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || ||||| | || | ||||||| | || ||||||| ||| | |||||| Sbjct 20995665 ATCTTGGCTTTTACATTATCAATGGTGTCGGAGCTTTCAACCTCAAGGGTTATTGTCTTG 20995606 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | ||||| || || |||||||| Sbjct 20995605 CCGGTGAGAGTTTTCACAAAGATTTGCAT 20995577 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 139549 ACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA 139608 ||| | ||| ||||| | || ||||| || || |||||||||||| | ||||| | Sbjct 21029188 ACGAAGAACCAAGTGCAGGGTCGACTCCTTCTGGATGTTATAATCGGCGAGTGTGCGCCC 21029129 Query 139609 GTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 139668 || || ||||||||||||||| |||| || | |||||||| || || || ||||| || Sbjct 21029128 ATCCTCAAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGAATCCCTTCCTT 21029069 Query 139669 GTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCAC 139728 ||| ||| || ||| | | || | || |||| | || ||||||| ||| | Sbjct 21029068 GTCCTGGATCTTAGCTTTGACATTATCAATGGTATCGGAGCTTTCAACCTCAAGGGTTAT 21029009 Query 139729 CGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || || || || | || || || || |||||||| Sbjct 21029008 GGTTTTTCCAGTGAGAGTCTTCACAAAGATTTGCAT 21028973 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | || ||||| || || ||||||||||| Sbjct 20996031 CCACCACGGAGACGGAGGACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGCA 20995972 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||||| || |||||||||||||| ||| |||| || | || || || || || Sbjct 20995971 AGTGTGCGACCATCCTCGAGCTGTTTACCGGCAAAGATAAGCCTCTGTTGGTCTGGTGGG 20995912 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| | || | ||| | | || | ||||||| | ||||| Sbjct 20995911 ATCCCTTCCTTGTC-TTGAATCTTGGCTTTCACATTGTCAATGGTGTCGGAGCTTTCCAC 20995853 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| || | ||||||||| || | || ||||| || || |||||| Sbjct 20995852 CTCAAGAGTAATCGTCTTGCCAGTGAGGGTCTTTACAAAGATCTGCATA 20995804 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 139556 ACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCG 139615 || ||||||| || ||||| || || |||||||| || | |||| || ||| Sbjct 21032704 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGCAAGAGTGCGGCCATCCTCG 21032645 Query 139616 AGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTG 139675 || ||||| |||||| |||| || | |||||| || || || || ||||| || || | Sbjct 21032644 AGTTGTTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCTGG 21032585 Query 139676 ATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTG 139735 || || ||||| | || | ||||| | | || ||||||| ||| | |||||| Sbjct 21032584 ATCTTGGCTTTTACATTATCAATGGTGTCAGAGCTTTCGACCTCAAGGGTTATGGTCTTG 21032525 Query 139736 CCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | || || || || |||||||| Sbjct 21032524 CCGGTGAGAGTCTTCACAAAGATTTGCAT 21032496 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || ||| | || | ||| | || ||||| || ||||||||||| ||| Sbjct 21032950 CCACCTCTTAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGCA 21032891 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| || || || ||||| |||||| | || || | |||||| || || || Sbjct 21032890 AGGGTGCGGCCATCCTCAAGTTGTTTGCCAGCAAAAATAAGCCTTTGCTGGTCTGGTGGG 21032831 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||| ||||| ||| | || | ||| | | || | ||||||| | ||||| Sbjct 21032830 ATCCCTTCCTTGTC-CTGAATCTTGGCTTTGACATTGTCAATAGTGTCGGAGCTTTCCAC 21032772 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| ||| | || || || || | || ||||| || || |||||| Sbjct 21032771 CTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTTACAAAGATCTGCATA 21032723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496055331281600