Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq1030 168 1e-36 seq1229 156 6e-33 >seq1030 Length=25649276 Score = 168 bits (186), Expect = 1e-36 Identities = 411/620 (66%), Gaps = 2/620 (0%) Strand=Plus/Minus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| || || |||||||||||||| |||||||| |||| || | ||||| || | Sbjct 1352124 ACAACAGGCACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGA 1352065 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGC-AAATGACCCA 50070 | || | ||| ||||||| || |||||||| ||||||||||| | ||| ||| ||| Sbjct 1352064 ATGTTAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAAAAACTCCCT 1352006 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTG 50130 || ||||| || || || || ||||| || | | |||||| | || | | | Sbjct 1352005 GAGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAG 1351946 Query 50131 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 50190 | | ||||| ||| ||||| ||| |||||| || || || | ||| || ||| Sbjct 1351945 CCGTCGATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATG 1351886 Query 50191 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTA 50250 || | ||||||| ||| ||||| | ||||| | ||||| || | | || Sbjct 1351885 GCGTGAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAG 1351826 Query 50251 TACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCG 50310 |||||||| || || ||||| || ||||| || || || |||||||| | ||||||| Sbjct 1351825 TACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGAGCCTCG 1351766 Query 50311 GTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTG 50370 | | ||| || || || || | | | || | || || || || ||||| | Sbjct 1351765 GCGACCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAG 1351706 Query 50371 GCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTC 50430 ||||| || || || | || || | | || || || |||| | ||||| | | Sbjct 1351705 GCTGCGAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCC 1351646 Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 || | || ||||| || | ||| ||||| || | |||||||| || || || || Sbjct 1351645 CAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCAGTCCAAAACGACGCTTCGGCT 1351586 Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGA 50550 || || ||||| | ||| || | | || || || ||||| || ||||| || ||| Sbjct 1351585 TTCTTGTACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATCGATCGGGA 1351526 Query 50551 TTTGGTGCAAGGATCGGTTC 50570 ||||| || |||| ||| || Sbjct 1351525 TTTGGGGCTAGGAGCGGCTC 1351506 Score = 93.3 bits (102), Expect = 6e-14 Identities = 111/148 (75%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 80334 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 80393 |||||| |||||||| | |||||||| || || || |||||| ||| |||| | || Sbjct 17554602 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 17554661 Query 80394 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTA 80452 ||| || | |||||| || || ||||| | ||| |||||||| | | || | ||| | Sbjct 17554662 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGATACCCTCATCA 17554720 Query 80453 ACATGTGCTGAGGTCTTTCAACGATCTT 80480 |||| |||||||||||||| || | ||| Sbjct 17554721 ACATATGCTGAGGTCTTTCTACAACCTT 17554748 Score = 87.8 bits (96), Expect = 3e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 ||||||||||| | || | || || | |||| | || | || |||||| | ||| ||| Sbjct 17554273 CCTCCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCCA 17554332 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 |||||||| || || || || ||||| |||||| | |||||||| || || ||| Sbjct 17554333 TTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACTGAG 17554392 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | ||| || || || || ||| ||| | || || || || || |||||||| Sbjct 17554393 ACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGATT 17554452 Query 80275 CCCTCTATGCTATCATCAATCAT 80297 || || || |||||||| |||| Sbjct 17554453 CCTTCAATACTATCATCTTTCAT 17554475 >seq1229 Length=21133251 Score = 156 bits (172), Expect = 6e-33 Identities = 390/587 (66%), Gaps = 8/587 (1%) Strand=Plus/Minus Query 49952 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 50011 ||| ||| || |||||||||||||| || || || |||| ||||| ||||| || | Sbjct 20051133 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGA 20051074 Query 50012 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCA 50070 | || || || ||||||| || |||||||| | ||||||||| | |||| || || Sbjct 20051073 AGGTTAGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCG-CGCAGAAACTGCCC 20051015 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCC--ATAACT-GGCG 50127 || ||||| || ||||| || |||||| || | |||||||| | || || | | Sbjct 20051014 GAGAAGAATATCCCTTCCACGCAGGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAG 20050955 Query 50128 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 50187 | ||| ||||| ||| | |||||||||||||| || || || |||| |||||| Sbjct 20050954 CCGTC---GATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACCGTTTCA 20050898 Query 50188 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGA 50247 | ||| ||| | | | ||||| | | ||| | || || || | | || Sbjct 20050897 AAGGCGCGAAATAAGCGGCTCTTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGC 20050838 Query 50248 CTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCC 50307 |||||||| || || ||||| || ||||| || || || |||||||| | ||| Sbjct 20050837 GAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCC 20050778 Query 50308 TCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCA 50367 |||| | || |||||| | || | | || | ||||| || ||||| || Sbjct 20050777 TCGGAGACTTGGACTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCATCC 20050718 Query 50368 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTA 50427 ||| || || || || | || || | || || ||||| |||| || ||||| Sbjct 20050717 GAGGCGGCGAAGAAGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGCGGTTAGGGAT 20050658 Query 50428 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCT 50487 | ||| | ||| || | || | || || || ||| | ||||||||||| || || Sbjct 20050657 TCCCACTGGCGGATGTCCTGCGACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTTCG 20050598 Query 50488 GCCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 50534 || || || ||||| | |||||| || | || |||||||| || || Sbjct 20050597 GCTTTCTTGTACATTTCCCAGATTTCCGGGTACTGGATTGGAAACAT 20050551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718256248252720