Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1030 107 2e-18 seq1340 89.7 5e-13 seq1229 87.8 2e-12 >seq1030 Length=25649276 Score = 107 bits (118), Expect = 2e-18 Identities = 119/158 (75%), Gaps = 2/158 (1%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 ||||| ||||| || || || |||||||||| || | |||||||| ||||||||| Sbjct 1352116 CACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTTAAT 1352057 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 || ||||| || || || ||||| | ||||||||| || ||| ||| || ||||| Sbjct 1352056 CCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAA 1351997 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCC 14029 || ||||| || ||||||||| ||||||| ||||| Sbjct 1351996 ATCCCCTCCACGCAAGCAAACGCGATTAATC--TCTCC 1351961 >seq1340 Length=31410901 Score = 89.7 bits (98), Expect = 5e-13 Identities = 83/104 (80%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| ||||| ||||| |||||||||||| ||||| |||||||| || || || Sbjct 2869524 CAAGCAAAGTCACAGTGAAGCCCCTCATCTCTAGATATAAGCTCGTTTGAGAACGTCAAA 2869465 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975 |||||||||| ||| | ||||| | ||| ||||| ||| |||| Sbjct 2869464 CCTGGCATCAGTCCCCTCTTTTTAAGCCAGAATATGGCA-CAAA 2869422 >seq1229 Length=21133251 Score = 87.8 bits (96), Expect = 2e-12 Identities = 121/164 (74%), Gaps = 8/164 (5%) Strand=Plus/Minus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 || ||||| ||||| || || || || ||||||| || || ||||| || || ||| Sbjct 20051128 AAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGAAGGTT 20051069 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGC--AGCAAATGACCCGGAAA 13986 | || ||||| || || || ||||| ||||||||||| || || || || || || | Sbjct 20051068 AGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCC--GAGA 20051011 Query 13987 AGAATATTCCCTCAACTGCAG-CAAACGCTATTAATCGTTCTCC 14029 ||||||| || || || |||| |||||||||| | || ||||| Sbjct 20051010 AGAATATCCCTTCCAC-GCAGGCAAACGCTATCAGTC--TCTCC 20050970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479719616753200