Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1165 109 6e-19 seq1 86.0 6e-12 >seq1165 Length=25613772 Score = 109 bits (120), Expect = 6e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | ||| | || | ||||| || ||||| ||||| || ||||||||| Sbjct 12024158 GCCTCCACGGAGACGAAGCACCAGATGAAGCGTCGATTCCTTTTGGATATTGTAATCGGC 12024099 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| ||||||||| ||||| || || |||||||||| ||||| || ||||| Sbjct 12024098 CAAGGTGCGGCCGTCTTCGAGCTGTTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGG 12024039 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || ||||| ||||| || || || | | || | ||||| | | || || Sbjct 12024038 GATTCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGAC 12023979 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | ||| | ||||||||||| | ||||| ||||| || ||||| Sbjct 12023978 TTCGAGAGTAATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 12023931 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 |||||| || | ||| | || | ||||| || || || || || |||||||||||| Sbjct 10816441 GCCTCCGCGGAGACGAAGGACAAGATGAAGGGTTGACTCCTTCTGGATGTTGTAATCGGC 10816382 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 || |||| ||| ||||| || || |||||| |||| || | ||||| || || || Sbjct 10816381 CAAGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATAAGCCTCTGCTGGTCCGGCGG 10816322 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || ||||| || || |||| | || | ||||||| | || || Sbjct 10816321 AATTCCCTCCTTGTCTTGGATCTTGGCCTTTACGTTGTCGATGGTGTCCGAGCTCTCGAC 10816262 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||| | ||| | || ||||||||||| ||||| ||||| || |||||| Sbjct 10816261 TTCGAGAGTAATAGTTTTGCCGGTCAAGGTTTTCACGAAGATCTGCATA 10816213 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||||||||| |||||||||||| || || | |||||||||||| || ||| Sbjct 10868199 GTGGATTCTTTTTGGATGTTGTAATCGGCCAAGGTCCGGCCGTCTTCGAGTTGCTTTCCA 10868140 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || ||||||| | ||||| |||||||| || || || ||||| || || || Sbjct 10868139 GCGAAGATCAGCCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTC 10868080 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||| | | || || || | || | |||||| ||||||| ||| Sbjct 10868079 ACGTTATCGATCGTGTCGGAGCTCTCGACCTCGAGGGTAATCGTCTTCCCGGTCAGGGTT 10868020 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 10868019 TTGACGAAGATCTGCAT 10868003 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||||||||| |||||||||||| || |||| |||||||||||| || ||| Sbjct 10936093 GTGGATTCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGTTGCTTCCCA 10936034 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| ||||| ||||| || || || || || || ||||| || || || Sbjct 10936033 GCAAAGATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTG 10935974 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | || ||||| | || | ||||||||||| | ||| Sbjct 10935973 ACGTTGTCGATTGTGTCGGAGCTCTCCACTTCGAGGGTGATTGTCTTGCCGGTGAGGGTT 10935914 Query 143168 TTTACGAATATTTGCAT 143184 || || ||||| ||||| Sbjct 10935913 TTCACAAATATCTGCAT 10935897 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 142969 ACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA 143028 |||||| || | ||||| || || || || || ||||||||||| | || || Sbjct 10936340 ACGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAATCCGCAAGCGTCCTTCC 10936281 Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 || || || || || |||||| ||||||| || |||||||| || || || |||||||| Sbjct 10936280 ATCCTCCAGCTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCAGGTGGGATCCCTTCTTT 10936221 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 || |||||| || | | || | ||||| | | || ||||| | ||| | Sbjct 10936220 ATCCTGGATTTTTGCCTTGACGTTGTCAATGGTGTCAGAGCTCTCGACTTCCAGAGTGAT 10936161 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||| || |||| ||||| ||||| || ||||| Sbjct 10936160 CGTCTTTCCCGTCAGGGTTTTGACGAAGATCTGCAT 10936125 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||||||| || |||| ||||||||||| || || Sbjct 10928084 GTTGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCGAGTTGCTTTCCG 10928025 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||||||||| |||||||| ||||| || || || ||||| || || || Sbjct 10928024 GCGAAGATCAGACGCTGCTGATCCGGAGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTG 10927965 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | || ||||| | ||| | ||| |||||||| | ||| Sbjct 10927964 ACGTTGTCGATTGTGTCAGAGCTCTCCACTTCGAGAGTGATCGTTTTGCCGGTTAGGGTT 10927905 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 10927904 TTCACGAAGATCTGCATA 10927887 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||||||| || |||| ||||||||||| || || Sbjct 10867971 GTTGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCGAGTTGCTTTCCG 10867912 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||||||||| |||||||| ||||| || || || |||| || || || Sbjct 10867911 GCGAAGATCAGACGCTGCTGATCCGGAGGGATCCCCTCCTTGTGCTGGATCTTGGCCTTG 10867852 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | || ||||| | ||| | ||| |||||||| | ||| Sbjct 10867851 ACGTTGTCGATTGTGTCAGAGCTCTCCACTTCGAGAGTGATCGTTTTGCCGGTTAGGGTT 10867792 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 10867791 TTCACGAAGATCTGCATA 10867774 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||||||||| |||||||||||| || |||| |||||| | ||| || || Sbjct 10928312 GTGGATTCTTTTTGGATGTTGTAATCGGCCAAGGTGCGGCCGTCTTCCAATTGCTTTCCG 10928253 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || ||||||| | ||||| |||||||| || || || ||||| || || || Sbjct 10928252 GCGAAGATCAGCCTCTGCTGGTCGGGAGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTC 10928193 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||| | | || || || | || | |||||| ||||| | ||| Sbjct 10928192 ACGTTATCGATCGTGTCGGAGCTCTCGACCTCGAGGGTAATCGTCTTCCCGGTTAGGGTT 10928133 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| || ||||| Sbjct 10928132 TTGACGAAGATCTGCAT 10928116 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 142969 ACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGA 143028 ||||||||| | ||||| || ||||| || || ||||||||||| | || || Sbjct 12024602 ACGCAAAACCAGATGAAGAGTTGATTCCTTCTGAATGTTGTAATCCGCGAGCGTCCTTCC 12024543 Query 143029 GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTT 143088 || || || || || ||||| |||||| ||| ||||| || || || || ||||| || Sbjct 12024542 ATCCTCCAGCTGCTTGCCAGCGAAGATCAAACGCTGCTGGTCCGGCGGAATCCCTTCCTT 12024483 Query 143089 GTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCAC 143148 ||| || || || | | || | |||||| | | || ||||| | || | Sbjct 12024482 GTCCTGGATCTTGGCCTTGACGTTGTCGATCGTGTCGGAGCTCTCGACTTCGAGGGTAAT 12024423 Query 143149 CGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||| || || | ||||| |||||||| ||||| Sbjct 12024422 CGTCTTTCCCGTTAGGGTTTTGACGAATATCTGCAT 12024387 Score = 82.4 bits (90), Expect = 8e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| || ||||| || || || ||||||||| || |||| ||| |||||||| Sbjct 12024361 TGAAGAGTTGATTCCTTCTGGATATTGTAATCGGCCAAGGTGCGGCCGTCCTCGAGTTGC 12024302 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 || || || ||||||| | ||||| || || || || ||||| ||||| || || Sbjct 12024301 TTTCCGGCGAAGATCAGCCTCTGCTGGTCCGGCGGAATCCCTTCCTTGTCCTGGATCTTG 12024242 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 || | | || | |||||| | | || ||||| | ||| | ||||||||||| Sbjct 12024241 GCCTTGACGTTGTCGATCGTGTCGGAGCTCTCAACTTCGAGAGTAATGGTCTTGCCGGTT 12024182 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 | ||||| ||||| || ||||| Sbjct 12024181 AGGGTTTTCACGAAGATCTGCAT 12024159 >seq1 Length=28940139 Score = 86.0 bits (94), Expect = 6e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGC-TCGAGTCTTC 143034 || ||||||| || ||||| || || |||||||| || | ||||| || | || || Sbjct 20996241 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCA-TCCTC 20996183 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 ||||||||||| ||| |||| || | |||||| || || || || ||||| || || Sbjct 20996182 TAGTTGTTTACCGGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATCCTG 20996123 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 |||||| ||| | | || | ||||| | | ||| || |||| || | ||||| Sbjct 20996122 AATTTTGGCTTTGACATTGTCAATGGTGTCGGAGCTTTCCACCTCAAGGGTGATAGTCTT 20996063 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || || | || ||||| || || |||||| Sbjct 20996062 TCCAGTGAGGGTCTTTACAAAGATCTGCATA 20996032 Score = 82.4 bits (90), Expect = 8e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 || ||||| |||||||||||| |||| || | |||||||| || || || ||||| ||| Sbjct 20995731 TCCTCGAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGATCTGGTGGGATCCCTTCCTTG 20995672 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || || ||||| | || | ||||| | | ||| || |||| || | Sbjct 20995671 TCCTGGATCTTGGCTTTTACATTATCAATGGTGTCGGAGCTTTCAACCTCAAGGGTTATT 20995612 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||||||||| | ||||| || || |||||||| Sbjct 20995611 GTCTTGCCGGTGAGAGTTTTCACAAAGATTTGCAT 20995577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507005539923360