Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1030 116 5e-21 >seq1030 Length=25649276 Score = 116 bits (128), Expect = 5e-21 Identities = 374/564 (66%), Gaps = 26/564 (5%) Strand=Plus/Plus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 ||||||||||||||||| || || | || || |||||||| | || || || ||||| Sbjct 1351566 ATTTGGGAAATGTACAAGAAAGCCGAAGCGTCGTTTTGGACTGCTGAGGAAGTTGATCTT 1351625 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAG----TTTAT 125134 || | || || | | |||||| | | | || | |||| ||||| || | Sbjct 1351626 TCGCAAGATCTCCGCCACTGGGAGGCCC---TAACCG---CTGA-CGAGAAGCACTTCGT 1351678 Query 125135 ATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGAC 125194 ||||| | | |||||||| || | |||||| || |||||| ||| || || Sbjct 1351679 CACGCACGTGCTCGCCTTCTTCGCAGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGG 1351738 Query 125195 ACGATTCTCTCAAGAGTTGACCAT-TC-CAGAGGTGTCGTGCTTT-TACGGATTCCAAAT 125251 | | ||| ||| | ||| || | |||| ||| || || ||||| |||||||| Sbjct 1351739 AAGGTTCATGACGGAGGT--CCAGGTCGCCGAGGC-TCGCGCCTTCTACGGCTTCCAAAT 1351795 Query 125252 CATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGA 125311 | || |||||| | ||||| ||||||||||| || | || | ||||| || Sbjct 1351796 CGCCATCGAGAACATCCACTCCGAAATGTACTCGCTGCTTCTAGAAACTTACATCAAAGA 1351855 Query 125312 -TCCGCAACGTAAACACATG-CTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAA 125369 |||| ||| ||| | | |||||| |||| ||||| ||||| || | | || ||| Sbjct 1351856 CTCCG--ACGAAAAGAACCGTCTCTTTCACGCCATCGAGACGGTTCCCTGCGT-CGCAAA 1351912 Query 125370 -AAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACT 125428 || || |||| | | |||||||| | | || ||| ||| || ||| | Sbjct 1351913 GAAAGCCACGTGGGCGTTAAATTGGATCGACGGCTCGGAGACTTT---CGCGGAGAGATT 1351969 Query 125429 GGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTG 125488 | || || || ||| ||||| || ||||| || || |||||| || || ||||| Sbjct 1351970 AATCGCGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTGCGCGATATTTTG 1352029 Query 125489 GCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGA 125548 |||||| |||||||| | ||||| ||| | || | |||||||| || || ||||| Sbjct 1352030 GCTCAAAAAGCGCGGGTTAATGCCGGGATTAACATTCTCAAACGAGTTGATCTCGCGAGA 1352089 Query 125549 CGAGGGCCTACACTGTGACTTTGC 125572 ||||| || ||||| || || || Sbjct 1352090 TGAGGGTCTCCACTGCGATTTCGC 1352113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741046249990480