Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1165 107 2e-18 seq1 89.7 4e-13 >seq1165 Length=25613772 Score = 107 bits (118), Expect = 2e-18 Identities = 142/195 (73%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || ||||||||||| ||||| ||| ||||||| |||||||| ||| || | Sbjct 10317630 CTCCTTCTGGATGTTGTAATCCGCCAAGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCGAA 10317571 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | |||||||| ||| || | | |||||||||| || || ||||| | Sbjct 10317570 GATCAGCCGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGGATCTTAGCCTTGACGTT 10317511 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || || || |||| |||| ||||| || ||||| || ||||| | ||||||| Sbjct 10317510 GTCG--ATCGTGTCGGAGCTCTCCACCTCGAGAGTGATGGTCTTGCCGGTCAAAGTTTTC 10317453 Query 48713 ACAAAAATCTGCATC 48727 ||||| ||||||||| Sbjct 10317452 ACAAAGATCTGCATC 10317438 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||| ||||||||||||||| |||||||| || | || | ||||| ||||| Sbjct 10936556 ATGGAGGGTGGACTCCTTTTGAATGTTATAATCAGCTAAATTACGGCCATCCTCAAGCTG 10936497 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || | | ||||||||| || | | |||||| ||| ||| || Sbjct 10936496 CTTCCCAGCAAAGATGAGCCTCTGCTGATCAGGTGGAATCCCTTCCTTATCCTGAATCTT 10936437 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | | |||||||| | | |||| ||| | || || ||||| || || Sbjct 10936436 AGCCTTGACATTGTCAATGGTATCAGAACTCTCCACCTCCAGGGTAATTGTTTTCCCAGT 10936377 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || ||||||||||| Sbjct 10936376 AAGAGTCTTGACGAAAATCTGCAT 10936353 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||| |||||| ||||||||||||||||||| ||| ||||||| ||||| Sbjct 12024818 ATGGAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAGAGTACGCCCGTCCTCAAGCTG 12024759 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || | | ||||||||| || | | |||||||||| ||| || Sbjct 12024758 CTTCCCAGCGAAGATGAGCCTCTGCTGATCAGGTGGGATCCCTTCCTTGTCCTGAATCTT 12024699 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 |||| | | |||||||| | | ||| ||| | || || || || ||||| Sbjct 12024698 GGCTTTGACATTGTCAATGGTATCAGAACTCTCTACCTCCAGGGTAATCGTCTTCCCGGT 12024639 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 | || || |||||||||||||| Sbjct 12024638 CAATGTCTTAACAAAAATCTGCAT 12024615 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 || ||||||||||||||||| ||||| || |||| || || ||||| || | | Sbjct 10936087 TCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGTTGCTTCCCAGCAAAG 10936028 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TAG 48653 || | ||||||||| ||| ||| | | ||||||||| || || ||||| | | Sbjct 10936027 ATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTG 10935968 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 || || || |||| |||| |||| || || || || |||||||| ||||||| Sbjct 10935967 TCG--ATTGTGTCGGAGCTCTCCACTTCGAGGGTGATTGTCTTGCCGGTGAGGGTTTTCA 10935910 Query 48714 CAAAAATCTGCATC 48727 |||| ||||||||| Sbjct 10935909 CAAATATCTGCATC 10935896 >seq1 Length=28940139 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || || ||||| |||||||| ||| | |||||||||||||| ||| | | Sbjct 21034055 CTCCTTCTGGATATTGTAGTCAGCCAAAGTACGCCCATCCTCCAGCTGCTTCCCGGCAAA 21033996 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||| || | ||||||||| || | | |||||||||| ||||| ||| | | Sbjct 21033995 AATCAACCTCTGCTGATCTGGAGGAATCCCTTCCTTGTCCTGGATTTTAGCCTTCACATT 21033936 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| || | | ||| ||| | || |||||||| || || | || ||||| Sbjct 21033935 ATCAATGGTGTCTGAACTCTCAACCTCCAGGGTAATGGTTTTTCCCGTCAATGTCTTCAC 21033876 Query 48715 AAAAATCTGCAT 48726 ||||||||||| Sbjct 21033875 GAAAATCTGCAT 21033864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421244022669398