Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq1282 111 8e-20 seq1229 111 8e-20 seq1165 111 8e-20 seq965 109 3e-19 seq616 109 3e-19 seq1030 104 1e-17 >seq1282 Length=25111302 Score = 111 bits (122), Expect = 8e-20 Identities = 88/106 (83%), Gaps = 3/106 (3%) Strand=Plus/Plus Query 11427 GGAAATATAGAATTAATAAAAAATCAA---ATTGGCCCATGAAAGGATCGAACCTTCGAC 11483 ||||| | |||| | ||||||| | ||||||||||| | | |||||||| |||| Sbjct 4156803 GGAAAAACGGAATGGAAAAAAAATATATATATTGGCCCATGCAGGTCTCGAACCTGCGAC 4156862 Query 11484 CTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 4156863 CTTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 4156908 Score = 109 bits (120), Expect = 3e-19 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 22183047 AAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 22183106 Query 11512 CAACTGAGCTAATGGGCCG 11530 ||||||||||||| ||||| Sbjct 22183107 CAACTGAGCTAATAGGCCG 22183125 Score = 107 bits (118), Expect = 1e-18 Identities = 74/84 (88%), Gaps = 3/84 (4%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||||| |||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 3616592 AAAATC---TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 3616648 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 3616649 TCTAACCAACTGAGCTAATAGGCC 3616672 >seq1229 Length=21133251 Score = 111 bits (122), Expect = 8e-20 Identities = 79/90 (88%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATT-GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 || ||||||||| || |||||||| | | |||||||| |||||||||||||||||||| Sbjct 781146 AAAAAAAAATCATTTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCA 781087 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| ||||||||||||||| |||| Sbjct 781086 CGACGCTCTAACCAACTGAGCTAATAGGCC 781057 Score = 107 bits (118), Expect = 1e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 8323280 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 8323339 Query 11516 TGAGCTAATGGGCCGT 11531 ||||||||| |||||| Sbjct 8323340 TGAGCTAATAGGCCGT 8323355 Score = 91.5 bits (100), Expect = 8e-14 Identities = 77/94 (82%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 11438 ATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 |||||||| |||| |||||||||| | | |||||| | ||||||| ||||||||| Sbjct 5578332 ATTAATAATT--TCAACTTGGCCCATGCAGGTCTCGAACTTGTGACCTTCACGTTATTAG 5578389 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||||||||| ||||||| ||||||| ||| || Sbjct 5578390 CACGACGCTCTTACCAACTAAGCTAATAGGCAGT 5578423 >seq1165 Length=25613772 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 17695089 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 17695030 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 17695029 CTGAGCTAATGGGCC 17695015 Score = 100 bits (110), Expect = 1e-16 Identities = 74/86 (86%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11445 AAAAATCAA-ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| ||| | ||||||||| | | |||||||| ||||||||||||||||||||| || Sbjct 16816397 AAAAAACAACACTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACAAC 16816338 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||||| |||| Sbjct 16816337 GCTCTAACCAGCTGAGCTAATAGGCC 16816312 >seq965 Length=51047765 Score = 109 bits (120), Expect = 3e-19 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 |||||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||| Sbjct 7363482 AATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACC 7363423 Query 11513 AACTGAGCTAATGGGCC 11529 |||||||||||| |||| Sbjct 7363422 AACTGAGCTAATAGGCC 7363406 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 25642802 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 25642743 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 25642742 TGAGCTAATAGGCC 25642729 >seq616 Length=36375926 Score = 109 bits (120), Expect = 3e-19 Identities = 76/87 (87%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||| | | |||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 23679114 AAAAATTGATTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 23679173 Query 11504 GCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||| ||||||||||||||| ||||| Sbjct 23679174 GCTCTAACCAACTGAGCTAATAGGCCG 23679200 >seq1030 Length=25649276 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1439658 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1439599 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 1439598 TGAGCTAATAGGCC 1439585 Score = 104 bits (114), Expect = 1e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 || || ||| ||||||||| | | |||||||| || ||||||||||||||||||||||| Sbjct 20547377 AAGATAAAAATGGCCCATGCAGGTTTCGAACCTGCGGCCTTCGCGTTATTAGCACGACGC 20547318 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 20547317 TCTAACCAACTGAGCTAATAGGCC 20547294 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261486744680248