Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1 158 2e-34 seq1282 147 3e-31 seq1165 100 4e-17 >seq1 Length=28940139 Score = 158 bits (174), Expect = 2e-34 Identities = 179/240 (75%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||| || || ||||| ||||| |||||||| || ||||| | ||||| |||||| Sbjct 27252200 GATAACATTCAGGGGATCACAAAGCCGGCTATCCGGCGGCTGGCGAGGCGTGGCGGAGTC 27252141 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 |||||| || || || | || || |||| ||| | |||||||||||||| | || Sbjct 27252140 AAGCGTATCAGCGGTCTGATTTACGAGGAGACTCGCGGGGTTTTGAAGATCTTTTTGGAG 27252081 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | ||| || | ||||||| | || || ||||||||| ||||||||||||||| || Sbjct 27252080 AACGTGATTCGTGATGCTGTGACTTACACTGAGCACGCTCGTCGTAAGACTGTCACCGCC 27252021 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||||| | || ||||| ||||| | || ||| | | |||| ||||| || ||||| Sbjct 27252020 ATGGATGTTGTTTATGCTTTGAAGAGGCAGGGCAGGACCCTTTACGGTTTCGGTGGTTAA 27251961 >seq1282 Length=25111302 Score = 147 bits (162), Expect = 3e-31 Identities = 194/269 (72%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| || | ||||| |||||||| || || ||||| ||||| ||||| Sbjct 23175451 CGCCAAGCGTCACCGTAAGGTGCTTCGCGATAACATTCAGGGTATCACAAAGCCGGCTAT 23175392 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| |||||||| | ||||||||||||||| || || ||| |||| || |||| Sbjct 23175391 CCGGCGTTTGGCTCGTAGAGGTGGAGTCAAGCGTATCAGCGGCTTGATCTACGAGGAGAC 23175332 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || ||||||| ||| | ||| ||| |||| ||| || | ||| || || Sbjct 23175331 ACGTGGCGTCCTGAAGATATTCTTGGAGAACGTCATCCGTGACGCCGTGACCTACACTGA 23175272 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| | | ||||| || ||| | ||||| |||| || || | || | || || Sbjct 23175271 GCACGCCAGGAGAAAGACCGTGACCGCGATGGACGTCGTTTACGCTCTCAAGAGGCAGGG 23175212 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | | ||||||| ||||| |||||| Sbjct 23175211 CAGGACTCTTTATGGATTTGGGGGTTAAT 23175183 Score = 143 bits (158), Expect = 4e-30 Identities = 192/267 (72%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | |||||| |||||||| || |||||||| ||||| || ||| Sbjct 22881374 GCAAAGCGTCACCGTAAGGTTCTTCGCGATAACATTCAGGGAATCACAAAGCCCGCAATC 22881433 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || |||||||||||||| ||||| || |||||| || ||| ||| |||| || |||| Sbjct 22881434 CGGCGTCTGGCTCGTCGGGGTGGGGTGAAGCGTATCAGTGGGTTGATCTACGAGGAGACA 22881493 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| |||||||||| | ||| ||| |||| || || | || || ||| Sbjct 22881494 CGTGGCGTTCTGAAGATCTTTTTGGAGAACGTCATCCGCGACGCCGTGACTTACACTGAG 22881553 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| | |||||||| || | ||||| |||| || || | || | || ||| Sbjct 22881554 CACGCTCGGAGGAAGACTGTGACGGCGATGGACGTCGTGTACGCGCTCAAGAGGCAGGGC 22881613 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | ||||| ||||| ||||| Sbjct 22881614 AGGACTCTCTATGGGTTTGGTGGTTAA 22881640 >seq1165 Length=25613772 Score = 100 bits (110), Expect = 4e-17 Identities = 185/269 (69%), Gaps = 2/269 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||| | ||||||| | | || || |||||||| || || ||||||||||| ||||| Sbjct 13243496 GCCAAGAGGCATCGCA-AGGTGTTGCGTGATAACATTCAGGGCATCACCAAGCCGGCTAT 13243554 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || ||| |||| | | || || || ||| | || || | |||| || |||| Sbjct 13243555 TCGCCGTTTGGCCAGAAGAGGAGGCGTTAAGAGAATCAGCGGTCTCATCTACGAGGAGAC 13243614 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | || | ||||||||| | ||| ||| || | |||||| | ||| || || Sbjct 13243615 ACGCGGCGTCCTCAAGATCTTCTTGGAGAACGTCATTCGCGATGCTGTGACCTACACTGA 13243674 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||||| || ||||| || ||| |||||||| |||| ||||| | || | || || Sbjct 13243675 GCACGCTCGCCGAAAGACGGTGACCGCCATGGATGTCGTTTATGCGCTCAAGAGGCAGGG 13243734 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | | | ||||| ||||| ||| || Sbjct 13243735 CAGGACTCTCTATGGCTTTGGTGGTTGAT 13243763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073921798814