Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq965 295 2e-75 >seq965 Length=51047765 Score = 295 bits (326), Expect = 2e-75 Identities = 384/526 (73%), Gaps = 4/526 (1%) Strand=Plus/Plus Query 19299 TGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCT 19358 ||| | || || || || ||| ||||||| | ||||||||||| || | ||||| ||| Sbjct 18211486 TGGATAACTAGCACTGAAAACTGCCTTTACATTGGTTGGTTTGGTGTTTTGATGATCCCT 18211545 Query 19359 TGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGAT 19418 ||| | | || ||| || ||||| |||||||||| || || || || |||||| Sbjct 18211546 ACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTTATTGCTGCTCCTCCAGTAGAT 18211605 Query 19419 ATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCT 19478 || || || || ||||| || | ||| || || || | || ||||| |||||||||||| Sbjct 18211606 ATTGACGGTATTCGTGAACCTGCTTCTGGATCTCTACTTTATGGAAATAATATTATTTCT 18211665 Query 19479 GGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCC 19538 | || | |||| | || | || ||||| |||| ||||| ||||| ||||||| | Sbjct 18211666 AGCGCGATTATTCCTACTTCTACAGCTATAGGTTTGCATTTTTACCCGATATGGGAAG-C 18211724 Query 19539 GGCA-CTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTT 19597 |||| | | ||||| ||||||||||| |||||||| ||| | || |||| | ||||| Sbjct 18211725 GGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTT 18211784 Query 19598 CTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAAT 19657 | |||| || ||||| ||| ||| | |||||||||| || | | |||| || Sbjct 18211785 CGTAATTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGTAT 18211844 Query 19658 GAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCT 19717 | | || ||||| || |||||| | | || | ||||||| |||||| ||||| Sbjct 18211845 GCGTCCTTGGATTGCTGTTGCATATTTAACTCCTGTTGCAGCAGCGACTGCTGT-TTTCT 18211903 Query 19718 CG-TTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTA 19776 | | |||||| | || ||||| |||||| ||||||||||||||| || |||||||||| Sbjct 18211904 TGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTA 18211963 Query 19777 CTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTAT 19822 |||| ||||| ||| | |||||||| || || ||||| |||||||| Sbjct 18211964 CTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTAT 18212009 Score = 257 bits (284), Expect = 5e-64 Identities = 392/553 (71%), Gaps = 24/553 (4%) Strand=Plus/Plus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 |||||| | ||| | || ||||| || ||||||||||| | ||||||||||| || | Sbjct 17866722 TTTTGTAACTGGATAACTAGTACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTG 17866781 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| ||| | | || ||| | ||||| | ||||| || || || || Sbjct 17866782 ATGATCCCTACTTTATTGACCGCAACTTATGTATTTATTATAGCCTTAATTGCTGCTCCT 17866841 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || ||||||| || || || | ||| || ||||| || || || | || ||||| ||| Sbjct 17866842 CCAATAGATATTGACGGTATTCATGAACCTGTTTCTGGATCTCTACTTTATGGAAATAAT 17866901 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 ||||||| ||| || | |||| | || || ||||| |||| ||||| ||||| Sbjct 17866902 ATTATTTTTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATA 17866961 Query 19530 TGGGAAGCCGGCA-CTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGT 19588 ||||||| ||||| | | ||||| ||||||||||| ||| |||| ||| | || |||| Sbjct 17866962 TGGGAAG-CGGCATCCGTTGATGAATGGTTATACAATGGCAGTCCTTATGAGCTAATTGT 17867020 Query 19589 CTTCCACTTCTTAATAGGAGTAGC-------------AGC---ATACGCTGGTAGACAGT 19632 | ||||||||| | || ||||| ||| ||| ||| | ||| Sbjct 17867021 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGTTAGCTTGTTACATGGGTCGTGAGT 17867080 Query 19633 GGGAACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCAC 19692 ||||||| || | | | || ||| | || ||||| | || |||| | || || || Sbjct 17867081 GGGAACTTAATTTCCGTCTGGGTATGCGTCCTTGGATTGTTGTTGCATGTTCA--ACTAC 17867138 Query 19693 TAT--CAGCAGCTCTTGCTGTGTTTCTCG-TTTACCCATTTGGGCAAGGGAGTTTTAGTG 19749 | | ||||||| |||||| ||||| | | |||||| | || ||||| |||||| || Sbjct 17867139 TGTTGCAGCAGCGACTGCTGT-TTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTG 17867197 Query 19750 ATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAAC 19809 ||||||||||||| || |||||||||||||| ||||| ||| | |||||||| || || | Sbjct 17867198 ATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGC 17867257 Query 19810 ACAATATCCTTAT 19822 |||| |||||||| Sbjct 17867258 ACAACATCCTTAT 17867270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144439202088888