Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq965 259 8e-64 >seq965 Length=51047765 Score = 259 bits (286), Expect = 8e-64 Identities = 353/493 (72%), Gaps = 0/493 (0%) Strand=Plus/Plus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCG 211669 ||||||||||||||||| | |||||||| | | | | ||||| | ||||| Sbjct 18211517 TTGGTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTA 18211576 Query 211670 TAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTT 211729 | || || || || || ||||| || ||||| ||||| || |||||||| | |||| | Sbjct 18211577 TCGCCTTTATTGCTGCTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGCTTCTGGAT 18211636 Query 211730 CATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCG 211789 | | | ||||| || || || || ||| | || || |||| |||| | || || | Sbjct 18211637 CTCTACTTTATGGAAATAATATTATTTCTAGCGCGATTATTCCTACTTCTACAGCTATAG 18211696 Query 211790 GTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTG 211849 |||| || || || || || |||||||| ||| | ||||||| ||| | |||||||| | Sbjct 18211697 GTTTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCG 18211756 Query 211850 GTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGAC 211909 ||||||| || | | | | |||||| | || || | | |||||||| | Sbjct 18211757 GTCCTTATGAGCTAATTGTTCTACACTTCGTAATTGGTGTAGCTTGTTACATGGGTCGTG 18211816 Query 211910 AGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCAC 211969 ||||||||||| | |||| ||||||||||||||||||| |||||| |||| | | | Sbjct 18211817 AGTGGGAACTTAGTTTCCGTCTAGGTATGCGTCCTTGGATTGCTGTTGCATATTTAACTC 18211876 Query 211970 CTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAG 212029 |||| ||||||| ||||| ||| | | |||||| ||||||| || || || | Sbjct 18211877 CTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTG 18211936 Query 212030 ACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAAC 212089 | ||||||||| |||| || || || || |||||||||||| | |||||||| || || | Sbjct 18211937 ATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGC 18211996 Query 212090 ATAACATCCTTAT 212102 | ||||||||||| Sbjct 18211997 ACAACATCCTTAT 18212009 Score = 215 bits (238), Expect = 8e-51 Identities = 354/510 (69%), Gaps = 18/510 (4%) Strand=Plus/Plus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGC-TTTATC 211668 ||||||||||||||||| | |||||||| | | | | ||||| ||| ||||| Sbjct 17866762 TTGGTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTT-ATGTATTTATT 17866820 Query 211669 GTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGT 211728 |||| || || || || ||||| | ||||| ||||| || | |||||| || |||| Sbjct 17866821 ATAGCCTTAATTGCTGCTCCTCCAATAGATATTGACGGTATTCATGAACCTGTTTCTGGA 17866880 Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788 || | | ||||| || || || || | |||||| || |||| |||| || || Sbjct 17866881 TCTCTACTTTATGGAAATAATATTATTTTTGGTGCGATTATTCCTACTTCTGCAGCTATA 17866940 Query 211789 GGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGT 211848 ||||| || || || || || |||||||| ||| | ||||||| ||| | |||||||| Sbjct 17866941 GGTTTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGC 17867000 Query 211849 GGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTC-------------AGC 211895 ||||||| || | | | | |||||| | | || | | ||| Sbjct 17867001 AGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGTTAGC 17867060 Query 211896 AT---ACATGGGAAGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTG 211952 | ||||||| | ||||||||||| | |||| | ||||||||||||||||| Sbjct 17867061 TTGTTACATGGGTCGTGAGTGGGAACTTAATTTCCGTCTGGGTATGCGTCCTTGGATTGT 17867120 Query 211953 TGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGG 212012 |||||| | |||| | |||| ||||||| ||||| ||| | | |||||| |||| Sbjct 17867121 TGTTGCATGTTCAACTACTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCGG 17867180 Query 212013 TCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTT 212072 ||| || || || || ||||||||| |||| || || || || |||||||||||| | Sbjct 17867181 TCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGAT 17867240 Query 212073 CGTATTCCAAGCAGAACATAACATCCTTAT 212102 |||||||| || || || ||||||||||| Sbjct 17867241 TGTATTCCAGGCTGAGCACAACATCCTTAT 17867270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807541087972880