Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq1 120 3e-22 seq1165 96.9 3e-15 seq1282 89.7 5e-13 seq1030 89.7 5e-13 >seq1 Length=28940139 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | |||||||| || | ||||||||| | |||||| | || | ||| | Sbjct 21032724 ATGCAGATCTTTGTAAAGACCCTCACTGGAAAAACTATCACCCTTGAGGTGGAAAGCTCC 21032783 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | |||||| |||||| ||||| |||||||| || || || || Sbjct 21032784 GACACTATTGACAATGTCAAAGCCAAGATTCAGGACAAGGAAGGGATCCCACCAGACCAG 21032843 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||||| || |||| | ||||||||||| || |||| | | | | |||||||||| Sbjct 21032844 CAAAGGCTTATTTTTGCTGGCAAACAACTTGAGGATGGCCGCACCCTTGCCGACTATAAC 21032903 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||| || || || || |||| |||||||| | || ||||| |||| Sbjct 21032904 ATTCAGAAGGAGTCCACCCTCCACCTGGTCCTCCGTCTAAGAGGTGGAA 21032952 >seq1165 Length=25613772 Score = 96.9 bits (106), Expect = 3e-15 Identities = 105/137 (77%), Gaps = 2/137 (1%) Strand=Plus/Minus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||| ||||| || ||||||||||| || ||||| |||| | || |||||| | ||| Sbjct 9951394 GACAAGGAAGGCATTCCTCCCGATCAGCAGAGACTGATTTTTGCTGGTAAACAATTGGAA 9951335 Query 26922 GATGATAGAAACGTCAGC-GACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 |||| |||| || || || |||||||||||||| || || || | || ||||||| Sbjct 9951334 GATGGCAGAA-CGCTTGCAGATTATAACATTCAAAAGGAGTCGACGCTTCACTTGGTCCT 9951276 Query 26981 GAGACTTAGAGGAGGAA 26997 ||| || || ||||||| Sbjct 9951275 GAGGCTCAGGGGAGGAA 9951259 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 || ||||| | ||||| ||||| | || || || | |||||| ||||| | || Sbjct 10935894 AAGATGCAGATATTTGTGAAAACCCTCACCGGCAAGACAATCACCCTCGAAGTGGAGAGC 10935953 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 |||||| ||||| | ||||| ||||| ||||| || || || || || || Sbjct 10935954 TCCGACACAATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCGCCGGAC 10936013 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || | ||||| | | || || ||||||||||| | | | | ||| || Sbjct 10936014 CAGCAGCGTCTCATCTTTGCTGGGAAGCAACTCGAAGACGGCCGCACTTTGGCCGATTAC 10936073 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||||||||||||||| ||| | ||||| ||||| || ||| | || |||| Sbjct 10936074 AACATTCAAAAAGAATCCACTTTGCATCTTGTCCTCAGGCTTCGTGGTGGAA 10936125 Score = 82.4 bits (90), Expect = 7e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||| ||||| | || || ||||| |||||||| ||||| ||||| || || Sbjct 10317954 CGACACGATCGACAACGTGAAGGCCAAGATCCAGGACAAAGAGGGGATTCCTCCGGACCA 10318013 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAA 26947 || || ||||| | || |||||| || ||||| |||| | | || ||| || || Sbjct 10318014 GCAGAGGCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGGACTCTCGCCGATTACAA 10318073 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||||||| || || ||| |||| || ||||| Sbjct 10318074 CATTCAAAAGGAGTCCACTCTCCACCTTGTCCT 10318106 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATT--AGAATCAA 26826 ||||| | || || ||||| ||||||| || ||||||| |||| | ||| | | Sbjct 10928344 ATGCAGATCTTCGTCAAAACCCTAACTGGGAAGACGATCACTCTCGAGGTGGAGAGTTCA 10928403 Query 26827 ACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATC 26886 || || || || | ||||| ||||| ||||| |||||||| || || |||| Sbjct 10928404 --GATACGATTGATAATGTCAAGGCCAAGATCCAAGACAAGGAAGGGATCCCACCAGATC 10928461 Query 26887 AACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTAT 26945 |||||||| | || | | ||| |||||| | ||||| | | |||| || |||||| Sbjct 10928462 AACAAAGATTGATCTTTGCCGGGAAACAATTGGAAGACGGCCG-CACGTTGGCTGACTAT 10928520 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||| || ||||| || ||| | || || ||||| Sbjct 10928521 AACATCCAGAAAGAGTCAACTCTTCACCTTGTCCT 10928555 >seq1282 Length=25111302 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| |||| ||||| | || ||| | || | |||||| Sbjct 21395116 ATGCAGATCTTCGTGAAAACCCTAACGGGAAAGACCATAACCCTAGAGGTCGAATCATCG 21395057 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| ||||| ||||| || ||||| || || || || Sbjct 21395056 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATTCCACCGGACCAG 21394997 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || ||| || || ||||| || | |||| | | |||||| ||| Sbjct 21394996 CAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGAACCCTAGCCGACTACAAC 21394937 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| || || || |||| || ||||| Sbjct 21394936 ATCCAAAAGGAGTCAACACTCCACCTCGTCCT 21394905 >seq1030 Length=25649276 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| |||| ||||| | || ||| | || | |||||| Sbjct 22532597 ATGCAGATCTTCGTGAAAACCCTAACGGGAAAGACCATAACCCTAGAGGTCGAATCATCG 22532656 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | ||||| ||||| ||||| || ||||| || || || || Sbjct 22532657 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATTCCACCGGACCAG 22532716 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | ||||| | || ||| || || ||||| || | |||| | | |||||| ||| Sbjct 22532717 CAGCGTCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCAGAACCCTAGCCGACTACAAC 22532776 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| || || || |||| || ||||| Sbjct 22532777 ATCCAAAAGGAGTCAACACTCCACCTCGTCCT 22532808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478654035374560