Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq1165 107 2e-18 seq1 102 7e-17 >seq1165 Length=25613772 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | || || || |||||||| |||| |||||| | | Sbjct 10868003 ATGCAGATCTTCGTCAAAACCCTGACCGGGAAGACGATTACCCTCGAGGTCGAGAGCTCC 10868062 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | || || ||||| ||||| || || || |||||||| || Sbjct 10868063 GACACGATCGATAACGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCCGACCAG 10868122 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || || |||||||||||||| | | | | | | |||||| ||| Sbjct 10868123 CAGAGGCTGATCTTCGCTGGAAAGCAACTCGAAGACGGCCGGACCTTGGCCGATTACAAC 10868182 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||||||||| || Sbjct 10868183 ATCCAAAAAGAATCCAC 10868199 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || || |||||||| |||| |||||| | | Sbjct 10928116 ATGCAGATCTTCGTCAAAACCCTAACCGGGAAGACGATTACCCTCGAGGTCGAGAGCTCC 10928175 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | || || ||||| ||||| || || || |||||||| || Sbjct 10928176 GACACGATCGATAACGTGAAGGCCAAGATCCAAGACAAGGAGGGAATCCCTCCCGACCAG 10928235 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || ||| |||||| | ||||| | | | | | | |||||| ||| Sbjct 10928236 CAGAGGCTGATCTTCGCCGGAAAGCAATTGGAAGACGGCCGCACCTTGGCCGATTACAAC 10928295 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||||||||| || Sbjct 10928296 ATCCAAAAAGAATCCAC 10928312 Score = 105 bits (116), Expect = 6e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | || || ||||| |||| || || | ||||| ||||||||||| | Sbjct 12023928 AAGATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATTACTCTCGAAGTCGAGAGC 12023987 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||||||||| | ||||| ||||| ||||| ||||| || ||||| || Sbjct 12023988 TCCGACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGAATCCCTCCGGAC 12024047 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | ||||| | || ||| || || |||||||| | | | | | | |||||| Sbjct 12024048 CAGCAGCGTCTGATCTTCGCCGGAAAACAGCTCGAAGACGGCCGCACCTTGGCCGATTAC 12024107 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || ||||| ||||| || ||||| | ||| Sbjct 12024108 AATATCCAAAAGGAATCGACGCTTCATCTGGTG 12024140 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| ||||| |||||||| ||||||||||| | | Sbjct 12024387 ATGCAGATATTCGTCAAAACCCTAACGGGAAAGACGATTACCCTCGAAGTCGAGAGCTCC 12024446 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| ||||| ||||| ||||| || || || || || Sbjct 12024447 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCGCCGGACCAG 12024506 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||| | || |||||||| || || |||| || | || ||||| ||| Sbjct 12024507 CAGCGTTTGATCTTCGCTGGCAAGCAGCTGGAGGATGGAAGGACGCTCGCGGATTACAAC 12024566 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||||| || ||||| || ||||| | || || Sbjct 12024567 ATTCAGAAGGAATCAACTCTTCATCTGGTTTT 12024598 Score = 102 bits (112), Expect = 7e-17 Identities = 143/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | || || ||||| |||| || ||| |||| || ||||||| ||| Sbjct 10927884 CAATATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACGATCACTCTCGAAGTGGAGAG 10927943 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | ||||| ||||| | ||||| ||||| ||||| || || || ||||| || Sbjct 10927944 CTCTGACACAATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGGATCCCTCCGGA 10928003 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| ||| | ||||| | || ||| |||||||||||||||| | | | | | |||||| Sbjct 10928004 TCAGCAGCGTCTGATCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCTTGGCCGATTA 10928063 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||| || || || || || Sbjct 10928064 CAACATCCAGAAGGAGTCAAC 10928084 Score = 100 bits (110), Expect = 2e-16 Identities = 111/144 (77%), Gaps = 3/144 (2%) Strand=Plus/Minus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 ||||| |||||||| ||||||||||| ||||||||||||| | || || ||| | ||| Sbjct 9951394 GACAAGGAAGGCATTCCTCCCGATCAGCAGAGACTGATTTTTGCTGGTAAACAATTGGAA 9951335 Query 24144 GATGACAGAAACGTCAGC-GATTATAACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 |||| ||||| || || ||||||||||||||||| || || || |||| || || | Sbjct 9951334 GATGGCAGAA-CGCTTGCAGATTATAACATTCAAAAGGAGTCGACGCTTCACTTGGTCCT 9951276 Query 24203 AAGATTGAGAGGAGG-ACTATAAT 24225 || | || ||||| ||||| || Sbjct 9951275 GAGGCTCAGGGGAGGAACTATGAT 9951252 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || || || || || |||||||| | || || ||| | Sbjct 10317894 AATGCAGATCTTCGTCAAGACGTTGACCGGGAAGACGATTACCCTGGAGGTGGAGAGCTC 10317953 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||| ||||| | || || ||||| |||||||| || || ||||| || || Sbjct 10317954 CGACACGATCGACAACGTGAAGGCCAAGATCCAGGACAAAGAGGGGATTCCTCCGGACCA 10318013 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||| || || | || ||||||||| ||||| |||| | | | || |||||| || Sbjct 10318014 GCAGAGGCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGGACTCTCGCCGATTACAA 10318073 Query 24170 CATTCAAAAAGAATCTAC 24187 ||||||||| || || || Sbjct 10318074 CATTCAAAAGGAGTCCAC 10318091 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| ||||| | || || ||||| |||| || ||| |||| || ||||||| ||| Sbjct 10867771 CAATATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACGATCACTCTCGAAGTGGAGAG 10867830 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 | ||||| ||||| | ||||| ||||| |||| || || || ||||| || Sbjct 10867831 CTCTGACACAATCGACAACGTCAAGGCCAAGATCCAGCACAAGGAGGGGATCCCTCCGGA 10867890 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTA 24166 ||| ||| | ||||| | || ||| |||||||||||||||| | | | | | |||||| Sbjct 10867891 TCAGCAGCGTCTGATCTTCGCCGGAAAGCAACTCGAAGATGGCCGCACCTTGGCCGATTA 10867950 Query 24167 TAACATTCAAAAAGAATCTAC 24187 ||||| || || || || || Sbjct 10867951 CAACATCCAGAAGGAGTCAAC 10867971 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | ||||| ||| | ||||| ||||||||||| | | Sbjct 10816442 ATGCAGATCTTCGTGAAAACCCTGACTGGCAAAACTATTACTCTCGAAGTCGAGAGCTCC 10816501 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| |||||| ||||| || || || || || || || Sbjct 10816502 GACACCATCGACAACGTCAAGGCGAAGATTCAAGACAAGGAGGGAATCCCCCCGGACCAG 10816561 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | || || ||||| ||||| |||| | | | | | |||||| ||| Sbjct 10816562 CAGAGGCTTATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGCACCTTGGCCGATTACAAC 10816621 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 10816622 ATACAGAAGGAGTCAAC 10816638 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || || | ||||| ||||||| ||| | | Sbjct 12024159 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAGACCATTACTCTCGAAGTTGAGAGCTCC 12024218 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| ||||| | ||||| ||||| ||||| ||||| || || || || || Sbjct 12024219 GACACGATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATTCCGCCGGACCAG 12024278 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || ||| ||||||||||| || | | | | | | |||||| || Sbjct 12024279 CAGAGGCTGATCTTCGCCGGAAAGCAACTCGAGGACGGCCGCACCTTGGCCGATTACAAT 12024338 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || || ||||| || |||| Sbjct 12024339 ATCCAGAAGGAATCAACTCTTCA 12024361 Score = 86.0 bits (94), Expect = 5e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 || ||||| | ||||| ||||| | || || || | || ||| ||||||| ||| | Sbjct 10935894 AAGATGCAGATATTTGTGAAAACCCTCACCGGCAAGACAATCACCCTCGAAGTGGAGAGC 10935953 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 |||||| ||||| | ||||| ||||| ||||| || || || || || || Sbjct 10935954 TCCGACACAATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATTCCGCCGGAC 10936013 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||| | || || | | || |||||||||||||| | | | | | |||||| Sbjct 10936014 CAGCAGCGTCTCATCTTTGCTGGGAAGCAACTCGAAGACGGCCGCACTTTGGCCGATTAC 10936073 Query 24168 AACATTCAAAAAGAATCTAC 24187 ||||||||||||||||| || Sbjct 10936074 AACATTCAAAAAGAATCCAC 10936093 >seq1 Length=28940139 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| ||||| | ||||| ||| | || ||| | ||||| ||| Sbjct 21032951 AATGCAGATATTTGTGAAAACCCTGACTGGTAAAACTATCACCTTGGAAGTTGAGAGTTC 21033010 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || ||||| | ||||| |||||| ||||| || || || ||||| ||||| Sbjct 21033011 TGATACAATCGACAATGTCAAGGCTAAGATTCAGGACAAGGAGGGAATCCCTCCTGATCA 21033070 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||||||||||| | || ||||| || ||||||| | | | | | || || || Sbjct 21033071 GCAGAGACTGATTTTTGCTGGAAAGCAGCTAGAAGATGGCCGTACCCTTGCTGACTACAA 21033130 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTG 24200 |||||| || |||||||| |||| || ||| Sbjct 21033131 CATTCAGAAGGAATCTACCCTTCACTTGGTG 21033161 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | |||||||| || | ||||||||| | || ||| | || || || | | Sbjct 21032724 ATGCAGATCTTTGTAAAGACCCTCACTGGAAAAACTATCACCCTTGAGGTGGAAAGCTCC 21032783 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | |||||| |||||| ||||| ||||| || || || || || Sbjct 21032784 GACACTATTGACAATGTCAAAGCCAAGATTCAGGACAAGGAAGGGATCCCACCAGACCAG 21032843 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || || || |||| | ||||| ||||| || |||| | | | | | ||| |||||| Sbjct 21032844 CAAAGGCTTATTTTTGCTGGCAAACAACTTGAGGATGGCCGCACCCTTGCCGACTATAAC 21032903 Query 24171 ATTCAAAAAGAATCTAC 24187 ||||| || || || || Sbjct 21032904 ATTCAGAAGGAGTCCAC 21032920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429928674696690