Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq1 107 2e-18 seq1165 93.3 4e-14 >seq1 Length=28940139 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| || || ||||| |||||||| || ||| | || ||| | | Sbjct 21032724 ATGCAGATCTTTGTAAAGACCCTCACTGGAAAAACTATCACCCTTGAGGTGGAAAGCTCC 21032783 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 |||||| ||| |||| || ||| || ||| || || ||||| |||| || || Sbjct 21032784 GACACTATTG-ACAATGTCAAAGCCAAGATTCAGGACAAGGAAGGGATCCCACCAGACCA 21032842 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 |||||| ||||||| ||| ||||||||| | || |||| | ||| | ||||| ||||| Sbjct 21032843 GCAAAGGCTTATTTTTGCTGGCAAACAACTTGAGGATGGCCGCACCCTTGCCGACTATAA 21032902 Query 115465 CATTCAAAAAGAGTCTAC 115482 |||||| || ||||| || Sbjct 21032903 CATTCAGAAGGAGTCCAC 21032920 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAA--ACGGAGTCCA 115343 |||||||||||||| || || ||||| |||||||| || || | || | |||| | Sbjct 21033636 ATGCAAATTTTTGTGAAGACTCTCACTGGAAAAACAATCACTCTGGAGGTAGAGAGTTCG 21033695 Query 115344 GCGACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 | ||||| ||| | || || || || ||||| || ||| | || || | Sbjct 21033696 G--ACACTATTGATAATGTGAAGGCCAAGATCCAAGATAAGGAGGGCATTCCACCAGACC 21033753 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| || | |||| ||| ||||| || | ||||||| | ||| | || ||||| | Sbjct 21033754 AGCAGAGGTTGATTTTTGCAGGCAAGCAGCTTGAAGATGGGAGGACCCTTGCAGATTACA 21033813 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGGAA 115514 ||||||| || || || || | ||| ||||||||||| |||| ||||||| Sbjct 21033814 ACATTCAGAAGGAATCCACACTGCATTTGGTGTTGAGACTGCGTGGAGGAA 21033864 >seq1165 Length=25613772 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 115379 GATAAAGAAGGCGTCCCCGTTGATCAGCAAAGACTTATTTATGCGGGCAAACAATTAGAA 115438 || || |||||| | || |||||||| ||||| |||| ||| || |||||||| ||| Sbjct 9951394 GACAAGGAAGGCATTCCTCCCGATCAGCAGAGACTGATTTTTGCTGGTAAACAATTGGAA 9951335 Query 115439 GATGACAAAACCATGGCCGATTATAACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 |||| || ||| | || ||||||||||||||||| ||||| || | || |||| || Sbjct 9951334 GATGGCAGAACGCTTGCAGATTATAACATTCAAAAGGAGTCGACGCTTCACTTGGTCCTG 9951275 Query 115499 AGATTGCGAGGAGGAA 115514 || | | ||||||| Sbjct 9951274 AGGCTCAGGGGAGGAA 9951259 Score = 93.3 bits (102), Expect = 4e-14 Identities = 151/215 (70%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 115285 AATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAG 115344 |||||| || || |||||||| || |||||||| || || || | ||| ||| | Sbjct 10936124 AATGCAGATCTTCGTCAAAACCCTGACGGGAAAGACGATCACTCTGGAAGTCGAGAGCTC 10936183 Query 115345 CGACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATC 115403 ||||| ||| |||| || || |||||| ||||||||||| |||| ||||| Sbjct 10936184 TGACACCATTG-ACAACGTCAAGGCAAAAATCCAGGATAAAGAAGGGATCCCACCTGATC 10936242 Query 115404 AGCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATA 115463 |||| | || || | ||| || || || | || |||| | || | || ||||| | Sbjct 10936243 AGCAGCGCCTGATCTTTGCTGGGAAGCAGCTGGAGGATGGAAGGACGCTTGCGGATTACA 10936302 Query 115464 ACATTCAAAAAGAGTCTACTATACATATGGTGTTG 115498 ||||||| || ||||| ||| | ||| |||||||| Sbjct 10936303 ACATTCAGAAGGAGTCGACTCTTCATCTGGTGTTG 10936337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425336752935760