Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq1165 105 5e-18 seq965 105 5e-18 seq1 105 5e-18 >seq1165 Length=25613772 Score = 105 bits (116), Expect = 5e-18 Identities = 148/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || |||||||||||||| |||||||| ||||| | || | | ||||| | || Sbjct 10318097 TGGAGAGTGGACTCCTTTTGAATGTTGTAATCGGCGAGAGTCCGGCCATCCTCGAGCTGC 10318038 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 ||||| || | || |||| ||| |||||| ||| | ||||||||||| || || Sbjct 10318037 TTGCCGGCGAAGATGAGCCTCTGCTGGTCCGGAGGAATCCCCTCTTTGTCCTGGATCTTG 10317978 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || |||||| | | | | |||||| | |||| |||| ||| || || || |||| Sbjct 10317977 GC--CTTCACGTTGTCGATCGTGTCGGAGCTCTCCACCTCCAGGGTAATCGTCTTCCCGG 10317920 Query 16911 TCAGCGTTTTGACAAAAATCTGCATT 16936 ||| ||| ||||| || ||||||||| Sbjct 10317919 TCAACGTCTTGACGAAGATCTGCATT 10317894 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || || | ||| || || |||||||| ||||||||||| |||||| Sbjct 10816668 CCTCCGCGGAGACGAAGGACAAGATGGAGGGTTGACTCCTTCTGTATGTTGTAATCGGCC 10816609 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| | || || || || | ||||||| ||| |||||| || Sbjct 10816608 AAGGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATAAGCCTCTGCTGGTCCGGGGGG 10816549 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| ||| | | ||| || | | | | |||||| | ||| | Sbjct 10816548 ATTCCCTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACT 10816489 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | || || ||||| || ||||| ||||| || || |||||||| Sbjct 10816488 TCGAGAGTAATAGTTTTGCCAGTCAGGGTTTTCACGAAGATCTGCAT 10816442 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || || | ||| || || |||||||| || || ||||| || ||| Sbjct 10816896 CCACCACGGAGCCTGAGGACGAGATGAAGGGTTGACTCCTTCTGGATATTGTAATCAGCC 10816837 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | |||| |||| ||| ||||| ||| | || |||| ||| |||||| || Sbjct 10816836 AAGGTGCGGCCGTCTTCCAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGG 10816777 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| ||| | | ||| || | | | ||||| | ||| Sbjct 10816776 ATTCCCTCCTTGTCTTGAATCTTCGCCTTAACGTTATCGATCGTGTCTGAGCTCTCAACC 10816717 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||| || || || ||||| || ||||||||||| |||||||| Sbjct 10816716 TCGAGGGTTATCGTCTTCCCGGTTAGGGTTTTGACAAAGATCTGCAT 10816670 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| | |||||||| |||| || ||||| ||||||||||| ||||| || || || Sbjct 9951261 CCTCCCCTGAGCCTCAGGACCAAGTGAAGCGTCGACTCCTTTTGAATGTTATAATCTGCA 9951320 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| || | || ||||||||||| || ||| |||| || | ||| || || ||| Sbjct 9951321 AGCGTTCTGCCATCTTCCAATTGTTTACCAGCAAAAATCAGTCTCTGCTGATCGGGAGGA 9951380 Query 16829 ACGCCCTCTTTGTC 16842 | ||| || ||||| Sbjct 9951381 ATGCCTTCCTTGTC 9951394 >seq965 Length=51047765 Score = 105 bits (116), Expect = 5e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || |||| || |||| ||||| || |||||||| || || ||||||||||| Sbjct 46933600 CCCACCACGAAGCCGAAGCACCAGGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCGGC 46933541 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || |||| |||| || | || ||||| || | || || ||||| |||||| || Sbjct 46933540 CAAGGTTCGCCCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGTGG 46933481 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||||| ||||| || | | ||| || | | | | |||||| || |||| Sbjct 46933480 GATACCCTCCTTGTCCTGGATCTTCGCCTTGACGTTGTCGATTGTGTCGGAGGACTCCAC 46933421 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTTGT 16940 |||| || ||||| || || || || ||||| || || |||||||| |||| Sbjct 46933420 CTCCAACGTTATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTTGT 46933368 >seq1 Length=28940139 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| ||| | || |||| || || ||||||||||| || ||||| |||||||| Sbjct 21032950 CCACCTCTTAGACGGAGGACCAGGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCGGCA 21032891 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| | ||||||||| ||| ||||||||| || ||||| || Sbjct 21032890 AGGGTGCGGCCATCCTCAAGTTGTTTGCCAGCAAAAATAAGCCTTTGCTGGTCTGGTGGG 21032831 Query 16829 ACGCCCTCTTTGTCGGCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| || || ||| || || | | | | ||||||| | ||| Sbjct 21032830 ATCCCTTCCTTGTCCTGAATCTTGGCT--TTGACATTGTCAATAGTGTCGGAGCTTTCCA 21032773 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||| |||||||| || || || || ||||| |||||||| Sbjct 21032772 CCTCAAGGGTGATAGTTTTTCCAGTGAGGGTCTTTACAAAGATCTGCAT 21032724 Score = 96.9 bits (106), Expect = 3e-15 Identities = 145/205 (71%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAA-TTG 16791 || || |||||||||||||| |||||||| ||||| || | ||||||| || ||| Sbjct 25531339 TGGAGAGTGGACTCCTTTTGAATGTTGTAATCGGCGCGAGTCCAGCCGTCCTCAAAATTG 25531398 Query 16792 TTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTG 16851 |||| || | || |||| ||| ||| || || | ||||| ||||| ||| | Sbjct 25531399 CTTGCGGGCGAAGATGAGCCTCTGCTGGCCCGGCGGAATCCCCTCCTTGTCCTGAATCTT 25531458 Query 16852 CTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGT 16911 | |||||| | | | | |||||| | |||| ||| ||||||||||| ||||| Sbjct 25531459 CGTCTTCACGTTGTCGATCGTGTCGGAGCTCTCCACCTCCTGAGTGATGGTTTTCCCGGT 25531518 Query 16912 CAGCGTTTTGACAAAAATCTGCATT 16936 | ||| ||||| || ||||||||| Sbjct 25531519 CGACGTCTTGACGAAGATCTGCATT 25531543 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || || | |||||| ||||||||||| || |||||||| || || Sbjct 20996943 CCTCCACGGAGACGGAGCACAAGATGCAGAGTGGACTCCTTCTGGATGTTGTAATCAGCA 20996884 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||| | |||||| || ||| | || | || ||| ||||| || Sbjct 20996883 AGAGTCCTTCCATCCTCAAGTTGTTTTCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGA 20996824 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| || || || || || |||||| | | | | ||||| ||| Sbjct 20996823 ATCCCCTCCTTATCCTGGATCTTAGC--CTTCACATTGTCAATTGTGTCCGAACTCTCAA 20996766 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||||| || || || || || |||||||||||||| Sbjct 20996765 CCTCCAATGTGATGGTTTTCCCAGTGAGTGTCTTCACAAAAATCTGCAT 20996717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405081098060020