Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq1030 167 3e-36 seq1229 141 1e-28 >seq1030 Length=25649276 Score = 167 bits (184), Expect = 3e-36 Identities = 403/606 (67%), Gaps = 8/606 (1%) Strand=Plus/Minus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| || || |||||||||||||| |||||||| |||| || || ||||| || | Sbjct 1352124 ACAACAGGCACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGA 1352065 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT-CCA 32771 | || | ||| ||||||| || |||||||| ||||||||||| | |||||| | || Sbjct 1352064 ATGTTAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCG-CGCAAAAACTCCCT 1352006 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA---CCGGCG 32828 || |||||||| || || || ||||| || || | |||||| | || | | | Sbjct 1352005 GAGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAG 1351946 Query 32829 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888 | ||| ||||| ||| ||||| ||| |||||| || || || | ||||| Sbjct 1351945 CCGTC---GATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCG 1351889 Query 32889 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 32948 || || | ||||||| ||| ||||| | ||||| | || || || | | || Sbjct 1351888 ATGGCGTGAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGC 1351829 Query 32949 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCC 33008 |||||||| || || ||||| || ||||| ||||| || ||||||||| | |||| Sbjct 1351828 GAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGAGCC 1351769 Query 33009 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 33068 |||| | ||| || || || || | | | || | || || || || ||||| Sbjct 1351768 TCGGCGACCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCG 1351709 Query 33069 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 33128 |||||| || || || | || || | | || | || ||||| | ||||| Sbjct 1351708 GAGGCTGCGAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCC 1351649 Query 33129 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 33188 | ||| | || ||||| || | ||| ||||| || | |||||||| || || || Sbjct 1351648 TCCCAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCAGTCCAAAACGACGCTTCG 1351589 Query 33189 GCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTT 33248 || || || ||||| | ||| || | | || ||||| || || || ||||| || Sbjct 1351588 GCTTTCTTGTACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATCGATCG 1351529 Query 33249 GGATTT 33254 |||||| Sbjct 1351528 GGATTT 1351523 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 ||||||||||| | || | || || | |||| | || | || |||||| | ||| ||| Sbjct 17554273 CCTCCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCCA 17554332 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 |||||||| || || || || ||||| |||||| | |||||||| || || ||| Sbjct 17554333 TTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACTGAG 17554392 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| || || || || ||| ||| | || || || || || |||||||| Sbjct 17554393 ACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGATT 17554452 Query 63407 CCCTCTATACTATCATCCATCAT 63429 || || ||||||||||| |||| Sbjct 17554453 CCTTCAATACTATCATCTTTCAT 17554475 Score = 91.5 bits (100), Expect = 2e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 63466 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATT 63525 |||||| |||||||| | |||||||| || || || |||||| ||| || | | || Sbjct 17554602 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 17554661 Query 63526 GTACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTA 63584 ||| || | |||||| || || ||||| | ||| |||||||| | | || | ||| | Sbjct 17554662 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGATACCCTCATCA 17554720 Query 63585 ACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63644 |||| |||||||||||||| || | ||| | | || || | |||||| | || | Sbjct 17554721 ACATATGCTGAGGTCTTTCTACAACCTTCCCTTGGACCTTTAAGAGGTAGGACCTCTCAA 17554780 Query 63645 AAGTTTTAAAACCAAAATA 63663 ||||| || ||||| || Sbjct 17554781 GGGTTTTGAAGCCAAAGTA 17554799 >seq1229 Length=21133251 Score = 141 bits (156), Expect = 1e-28 Identities = 387/587 (66%), Gaps = 8/587 (1%) Strand=Plus/Minus Query 32653 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 32712 ||| ||| || |||||||||||||| || || || |||| |||| ||||| || | Sbjct 20051133 ACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGA 20051074 Query 32713 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCA 32771 | || || || ||||||| || |||||||| | ||||||||| | |||| || || Sbjct 20051073 AGGTTAGGCCCGGCATTAACCCGCGCTTTTTCAACCAAAATATCG-CGCAGAAACTGCCC 20051015 Query 32772 GAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC--ATAAC-CGGCG 32828 || ||||| || ||||| || ||||| || || |||||||| | || | | | | Sbjct 20051014 GAGAAGAATATCCCTTCCACGCAGGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAG 20050955 Query 32829 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCT 32888 | ||| ||||| ||| | |||||||||||||| || || || |||| || || Sbjct 20050954 CCGTC---GATCCAATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACCGTTTCA 20050898 Query 32889 ATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGA 32948 | || ||| | | | ||||| | | ||| | || || || | | || Sbjct 20050897 AAGGCGCGAAATAAGCGGCTCTTTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGC 20050838 Query 32949 CTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCC 33008 |||||||| || || ||||| || ||||| ||||| || ||||||||| | ||| Sbjct 20050837 GAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCC 20050778 Query 33009 TCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCA 33068 |||| | || |||||| | || | | || | ||||| || ||||| || Sbjct 20050777 TCGGAGACTTGGACTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCATCC 20050718 Query 33069 CTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTA 33128 ||| || || || || | || || | || || | ||| ||||| | ||||| Sbjct 20050717 GAGGCGGCGAAGAAGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGCGGTTAGGGAT 20050658 Query 33129 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 33188 | ||| | ||| || | || | || || || ||| | ||||||||||| || || Sbjct 20050657 TCCCACTGGCGGATGTCCTGCGACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTTCG 20050598 Query 33189 GCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 33235 || || || ||||| | |||||| || | || || |||||||| || Sbjct 20050597 GCTTTCTTGTACATTTCCCAGATTTCCGGGTACTGGATTGGAAACAT 20050551 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 ||||| ||||| | || | || || | |||| | || | || |||||| | ||| ||| Sbjct 17548207 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGCACAATGCCA 17548266 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 || ||||| ||||| || || ||||| ||||| | |||||||| || || ||| Sbjct 17548267 TTAGATGTCCCATTTGTTCCACGAATATAACTTCCTGTTGCACGAATGTTGTGAACTGAG 17548326 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| || || || || ||| ||| | || || || || |||||||| || Sbjct 17548327 ACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTATCATATATT 17548386 Query 63407 CCCTCTATACTATCATCCATCATG 63430 || || ||||||||||| ||||| Sbjct 17548387 CCTTCAATACTATCATCTTTCATG 17548410 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633620927280800