Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1030 228 9e-55 seq1229 194 2e-44 seq1103 91.5 2e-13 seq965 89.7 6e-13 seq616 89.7 6e-13 seq1282 87.8 2e-12 seq1165 86.0 7e-12 seq1 86.0 7e-12 >seq1030 Length=25649276 Score = 228 bits (252), Expect = 9e-55 Identities = 598/901 (66%), Gaps = 21/901 (2%) Strand=Plus/Minus Query 92790 CATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTC 92849 ||||||| | ||||| |||||||||||| | |||||||| ||||| ||||| |||| Sbjct 1352420 CATAACAGAAGCCTTTTGATATTCCCCAACTCTCTTTTCAAAAAAATTAGTCTTCCCTTG 1352361 Query 92850 CAAAGATATCGAATTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCG-A 92906 | || ||| | || | | | |||||| || | ||| | ||| | Sbjct 1352360 AAGCGAGATCAGCTCCATCCAATCAAAAGGATTC---GCCACACCGTACAGCTTCCCGTA 1352304 Query 92907 TCAACTCGTAC--AATAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACA 92964 | | || || || |||||||| || ||||| |||||||||||| |||||| || | Sbjct 1352303 CCCAAGCGCACCCAACAATCTATCCGCGACAAACTCTATGTACTGACTCATCAATTCTCC 1352244 Query 92965 ATTCATTCCTAGAAGACGTACA-GGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAA 93023 |||||| || | | ||| || || || || ||| || || ||| |||| || | | Sbjct 1352243 ATTCATCCCCACCA-ACGCGCACGGCAGCGCATCGCACACAAACTCTCTCTCTATCTCCA 1352185 Query 93024 CGGCTTCTTTCAAGATTTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAAT-TG 93082 | || || |||| | | | ||||| || | | | || || | |||| || Sbjct 1352184 CCGCCTCCTTCACTAACGCCTTCACTCT-CTCCTCGCTTAGCTTCGTCCTCAATAAACTG 1352126 Query 93083 TACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTG 93142 |||| | |||||| || ||| || | ||| || ||||| || |||||||| || | Sbjct 1352125 TACAACAGGCACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAG 1352066 Query 93143 AATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCA 93202 |||||||| || || | | || || || |||||||||||||| | |||||| || Sbjct 1352065 AATGTTAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCT 1352006 Query 93203 GaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAA 93262 || || || || || |||||| ||||| || | | | || || ||| | | || Sbjct 1352005 GAGAAGAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAG 1351946 Query 93263 TTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCG 93322 | | |||||| ||||| ||||| |||||| || | || || | || ||| Sbjct 1351945 ---CCGTCGATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCG 1351889 Query 93323 ATAGCGTTAAATAG---GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAAC 93379 || |||| ||| || || | | ||||| || ||| ||||| || || | | | Sbjct 1351888 ATGGCGTGAAAGAGACGGTTCTTT---TCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGC 1351832 Query 93380 AGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTA 93439 || || |||||||| || |||| ||||| || || |||||||| |||||||| | | Sbjct 1351831 AGCGAGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGA 1351772 Query 93440 GCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCA 93499 || || | || ||| || || || || | |||| || || ||| || || Sbjct 1351771 GCCTCGGCGACCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCG 1351712 Query 93500 TCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGC 93559 ||||| ||||| || || || | | ||| | | || || ||||| ||| | | || Sbjct 1351711 TCGGAGGCTGCGAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGG 1351652 Query 93560 TTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCT 93619 ||||| | | ||||||| |||||||| ||||| || ||||||||||||| ||| Sbjct 1351651 GCCTCCCAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCAGTCCAAAACGACGCT 1351592 Query 93620 TCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGA 93679 || ||||| |||||||| ||||| || | | | || ||||| || || ||| ||| ||| Sbjct 1351591 TCGGCTTTCTTGTACATTTCCCAAATTTGTGGGTACTGAATCGGGAACATGCAAAATCGA 1351532 Query 93680 T 93680 | Sbjct 1351531 T 1351531 >seq1229 Length=21133251 Score = 194 bits (214), Expect = 2e-44 Identities = 600/913 (66%), Gaps = 19/913 (2%) Strand=Plus/Minus Query 92803 TTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAA 92862 |||||||||||||| ||| | || ||||||||||| ||||| |||| || || ||| | Sbjct 20051416 TTTTGGTATTCCCCGACTCTCTTCTCAAAGAAATTCGTCTTCCCTTGCAGCGAAATCAAC 20051357 Query 92863 TTCA--CTAGTGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAAT 92920 | || | | | |||||| | || || ||| | | | | || ||| Sbjct 20051356 TCCATCCAATCAAACGGATTCGTCACGCCGTACACCTTCCCGCACCCGAGCGCGCCCAAC 20051297 Query 92921 AATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAG-AAG 92979 || ||||| || ||||| |||||||||||| |||||| | | ||||| || | || Sbjct 20051296 AACCTATCTGCCACAAACTCTATGTACTGACTCATCAACGCCCCGTTCATCCCCACCAAT 20051237 Query 92980 ACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGAT 93039 || || || || |||||| || ||| || |||| || | || || || |||| || Sbjct 20051236 GCGCAC-GGCAGCGCGTCGCACACGAACTCCCTCTCTATCTCCACCGCCTCCTTCACTAT 20051178 Query 93040 TTCTATTACTCTACTATTTGGTGGTTTTTGTACGACATAAT--TGTACATTAAGCACGCA 93097 | || || | || | | | ||| || | || | |||||| |||||||| Sbjct 20051177 CCCCATCACGCG-CTCCTCGCTTAATTT-GTTCCTCAGCAAGCTGTACAACAAGCACGCG 20051120 Query 93098 AAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGT 93157 || ||| || | ||||| ||||| || || | ||| || ||| |||| || || Sbjct 20051119 AAATCGCAGTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGAAGGTTAGGCCCGGC 20051060 Query 93158 AACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA-AAACTACCAGaaaaaaaTATACC 93216 | | || || || || | ||||||||| | ||| ||||| || || || ||||| || Sbjct 20051059 ATTAACCCGCGCTTTTTCAACCAAAATATCGC-GCAGAAACTGCCCGAGAAGAATATCCC 20051001 Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276 ||||||| ||||| || | | | || || || | | || | | |||||| Sbjct 20051000 TTCCACGCAGGCAAACGCTATCAGTCTCTCCGCGAATGTCTCCGAG---CCGTCGATCCA 20050944 Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAAT-A 93335 |||| ||||||||||| ||||| || || || | ||||| | ||| |||| | Sbjct 20050943 ATTTAGGGCCCAATCGGCCTTTTTGGCAACGCACGGCACCGTTTCAAAGGCGCGAAATAA 20050884 Query 93336 GGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAG 93395 | ||| ||||| || | | |||||| || || | | || || |||||||| | Sbjct 20050883 GCGGCTCT-TTTCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGCGAGTACATTTCGG 20050825 Query 93396 AATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCA 93455 | |||| ||||| || || |||||||| |||||||| | || || | || || | Sbjct 20050824 AGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCTCGGAGACTTGGA 20050765 Query 93456 CTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaa 93515 |||||| || || | |||| ||||| ||| || ||||| || || || || | Sbjct 20050764 CTTCTTTCATGAACCTGGCGGCGAGGTTTTCGAGGACGATTCCATCCGAGGCGGCGAAGA 20050705 Query 93516 aaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT--CGGA 93573 | || | | ||| | || || |||||||| || | | || ||||| | |||| Sbjct 20050704 AGGCGAGCACGTGCGTGATGAAGTGTTTCTCGTCGGCGGTTAGGGATTCCCACTGGCGGA 20050645 Query 93574 TAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTA 93633 | || | || || ||||| || || | |||||||| || ||||| ||||| ||||| Sbjct 20050644 T--GTCCTGCGACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTTCGGCTTTCTTGTA 20050587 Query 93634 CATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTT 93693 ||| ||||| || || | || || |||||||| ||| || || | ||||| | Sbjct 20050586 CATTTCCCAGATTTCCGGGTACTGGATTGGAAACATGCAGAATCGGTCTGGGTTCGGGGT 20050527 Query 93694 TAGTAACGGCTCT 93706 ||| | ||||||| Sbjct 20050526 TAGCAGCGGCTCT 20050514 >seq1103 Length=43299053 Score = 91.5 bits (100), Expect = 2e-13 Identities = 89/113 (79%), Gaps = 4/113 (4%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 42605373 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 42605316 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTGTTGCGGTTGGGAC 126380 ||| || |||||| ||| |||| | |||| | ||||| |||| |||| || Sbjct 42605315 TTCAAATCCCACAGCTGTCAAAATTTTAT--AATTTTTTTTTGCTTTTGGAAC 42605265 Score = 82.4 bits (90), Expect = 9e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | | Sbjct 30800068 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGG 30800125 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 30800126 GCGTGGGTTCAAATCCCACTTCTGACA 30800152 >seq965 Length=51047765 Score = 89.7 bits (98), Expect = 6e-13 Identities = 79/97 (81%), Gaps = 4/97 (4%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCG 126323 ||| ||| |||||||||||||||||||||||||||||| | |||||| || | ||| Sbjct 3022396 CAGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCG 3022453 Query 126324 TGGGTTCGAACCCCACACCTGACAAA--TTATTATTG 126358 ||||||| || |||||| ||| |||| ||||| ||| Sbjct 3022454 TGGGTTCAAATCCCACAGCTGTCAAAACTTATTTTTG 3022490 >seq616 Length=36375926 Score = 89.7 bits (98), Expect = 6e-13 Identities = 77/94 (82%), Gaps = 6/94 (6%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 10946455 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 10946512 Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTA 126355 ||||||||| || ||||| ||||||| || ||| Sbjct 10946513 CGTGGGTTCAAATCCCACTTCTGACAATTTTTTA 10946546 Score = 86.0 bits (94), Expect = 7e-12 Identities = 81/102 (79%), Gaps = 5/102 (5%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 32247739 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 32247682 Query 126328 TTCGAACCCCACACCTGACA---AATTATTATTGGAATTTTT 126366 ||| || |||||| ||| || |||| |||| ||||||| Sbjct 32247681 TTCAAATCCCACAGCTGTCAGACTATTAATATTATAATTTTT 32247640 >seq1282 Length=25111302 Score = 87.8 bits (96), Expect = 2e-12 Identities = 82/103 (80%), Gaps = 6/103 (6%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA---- 126320 ||||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || Sbjct 22902152 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGG 22902095 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATT 126363 |||||||||| || ||||| ||||||| | ||||| || || Sbjct 22902094 GCGTGGGTTCAAATCCCACTTCTGACAATTGTTTATTTGATTT 22902052 Score = 82.4 bits (90), Expect = 9e-11 Identities = 77/96 (80%), Gaps = 3/96 (3%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 6928833 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGC 6928892 Query 126323 GTGGGTTCGAACCCCACACCTGACAA-ATTATTATT 126357 |||||||| || ||||| ||||||| || ||| || Sbjct 6928893 GTGGGTTCAAATCCCACTTCTGACAATATAATTTTT 6928928 >seq1165 Length=25613772 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 20323485 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 20323542 Query 126328 TTCGAACCCCACACCTGACAAATT 126351 ||| || |||||| ||| |||||| Sbjct 20323543 TTCAAATCCCACAGCTGTCAAATT 20323566 >seq1 Length=28940139 Score = 86.0 bits (94), Expect = 7e-12 Identities = 73/89 (82%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| ||||| ||| | | || Sbjct 2715917 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCGAAAGAGGGC 2715976 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||| || ||||| |||||||||| Sbjct 2715977 GTGGGTTCAAATCCCACTTCTGACAAATT 2716005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556851068857520