Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq1229 206 5e-48 seq1030 170 4e-37 >seq1229 Length=21133251 Score = 206 bits (228), Expect = 5e-48 Identities = 448/662 (68%), Gaps = 10/662 (2%) Strand=Plus/Plus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGC-GCAGTTCTCCAACTGGACCGC 42343 ||| || ||| ||| |||||| ||||||||||| || | || | || ||||| || Sbjct 20050560 ATCCAGTACCCGGAAATCTGGGAAATGTACAAGAAAGCCGAAGCT-TCATTTTGGACGGC 20050618 Query 42344 CGAGGAGATTGACCTGGCCAAGGACA-CGGCCGGCTGGGAGTCACTGTCTGAGAACGAAA 42402 |||||| | |||||| | |||||| | ||| | ||||| || || | | |||| | Sbjct 20050619 GGAGGAGGTCGACCTGTCGCAGGACATCCGCCAG-TGGGAATCCCTAACCGCCGACGAGA 20050677 Query 42403 AGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGA 42462 | ||| ||| || | || ||||||||||||||||| || || || ||| || | Sbjct 20050678 AACACTTCATCACGCACGTGCTCGCCTTCTTCGCCGCCTCGGATGGAATCGTCCTCGAAA 20050737 Query 42463 ACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCT 42522 |||| ||| |||||||||||||||| || || || |||||||| ||||||||||| Sbjct 20050738 ACCTCGCCGCCAGGTTCATGAAAGAAGTCCAAGTCTCCGAGGCGCGTGCCTTCTACGGCT 20050797 Query 42523 TCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACA 42582 |||| || ||||| |||||| | ||||| || ||||| | || || | ||||||| Sbjct 20050798 TCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACTCGCTCCTTCTAGAAACGTACA 20050857 Query 42583 TCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCA 42642 | | ||| ||| | | | | || ||| | || ||| |||| ||| | Sbjct 20050858 TAAAAAACTCCGACGAAAAGAGCCGCTTATTTCGCGCCTTTGAAACGGTGCCGTGCGTTG 20050917 Query 42643 AGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGA 42702 || ||||| || ||||| || || |||||||| | | || | || |||| |||| Sbjct 20050918 CCAAAAAGGCCGATTGGGCCCTAAATTGGATCGA-CGGCTCG--GAGACATTCGCGGAGA 20050974 Query 42703 GGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCT 42762 | ||| |||| ||| || ||| || || || |||||||||||| ||| | | || | Sbjct 20050975 GACTGATAGCGTTTGCCTGCGTGGAAGGGATATTCTTCTCGGGCAGTTTCTGCGCGATAT 20051034 Query 42763 TCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCA 42822 | ||| | || || | || ||||| || || |||||||||||||| || ||| Sbjct 20051035 TTTGGTTGAAAAAGCGCGGGTTAATGCCGGGCCTAACCTTCTCGAACGAGCTAATCTCGC 20051094 Query 42823 GGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACA 42882 | || || || || || | || || || || | |||| | ||| || ||| ||| Sbjct 20051095 GAGATGAAGGACTCCACTGCGATTTCGCGTG---CTTGTTGTACAGCTTGCTGAGGAACA 20051151 Query 42883 AGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGT 42942 | ||||||| || || || | | |||||| |||||||| |||| ||||| Sbjct 20051152 AATTAAGCGAGGAGCGCGTGATGGGGATAGTGAAGGAGGCGGTGGAGATAGAGAGGGAGT 20051211 Query 42943 TC 42944 || Sbjct 20051212 TC 20051213 >seq1030 Length=25649276 Score = 170 bits (188), Expect = 4e-37 Identities = 356/523 (68%), Gaps = 7/523 (1%) Strand=Plus/Plus Query 42336 TGGACCGCCGAGGAGATTGACCTGGC-CAAGGACACGGCCGGCTGGGAGTCACTGTCTGA 42394 ||||| || ||||| |||| || | |||| | | ||| ||||||| | || | | Sbjct 1351602 TGGACTGCTGAGGAAGTTGATCTTTCGCAAGATCTCCGCCA-CTGGGAGGCCCTAACCGC 1351660 Query 42395 GAACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGT 42454 |||| ||| ||| ||| || | || ||||||||||| ||||| |||||||| || Sbjct 1351661 TGACGAGAAGCACTTCGTCACGCACGTGCTCGCCTTCTTCGCAGCCTCCGACGGCATCGT 1351720 Query 42455 CAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTT 42514 | |||||||| ||| |||||||||| ||||| ||| | ||||| ||| ||| Sbjct 1351721 CCTCGAGAACCTCGCCGGAAGGTTCATGACGGAGGTCCAGGTCGCCGAGGCTCGCGCCTT 1351780 Query 42515 CTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAA 42574 |||||||||||| || ||||| |||||| | ||||| || ||||| | || || | Sbjct 1351781 CTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACTCGCTGCTTCTAGA 1351840 Query 42575 CACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCC 42634 || |||||| || ||| ||| ||| | || || | ||||| |||||| | || Sbjct 1351841 AACTTACATCAAAGACTCCGACGAAAAGAACCGTCTCTTTCACGCCATCGAGACGGTTCC 1351900 Query 42635 CTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTT 42694 |||| || ||||| || |||||| | || |||||||| | | || | || || Sbjct 1351901 CTGCGTCGCAAAGAAAGCCACGTGGGCGTTAAATTGGATCGA-CGGCTCG--GAGACTTT 1351957 Query 42695 CGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTC-GGGCGCCTTCG 42753 || ||||| | | || ||| | ||| ||||| || |||||||| ||| | || | Sbjct 1351958 CGCGGAGAGATTAATCGCGTTTGCTTGCGTGGAGGGGATTTTCTTCTCAGGGAGTTTTTG 1352017 Query 42754 CCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAAC 42813 | | || || |||||||| || | || ||||| ||| | || ||||| ||||| Sbjct 1352018 -CGCGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGATTAACATTCTCAAACGAGT 1352076 Query 42814 TCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCT 42856 | ||| | || ||||| || || | || || || ||||| Sbjct 1352077 TGATCTCGCGAGATGAGGGTCTCCACTGCGATTTCGCGTGCCT 1352119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944322697672480