Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq1165 105 5e-18 seq965 93.3 3e-14 >seq1165 Length=25613772 Score = 105 bits (116), Expect = 5e-18 Identities = 165/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || ||||| |||| |||||||||||| || ||||||||||||||||||||| | Sbjct 10936352 ACCGCCCCTCAGACGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAATCCG- 10936294 Query 33960 CAATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 ||| ||| | | || |||| ||||| || ||||| ||||||||||||||||| | Sbjct 10936293 CAAGCGTCCTTCCATCCTCCAGCTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCAGGTG 10936234 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCG 34077 | | | ||||| ||| |||||| ||| | | | | |||| || | ||| Sbjct 10936233 GGATCCCTTCTTTATCCTGGATTTTTGCCTTGACGTTGTCAATGGTGTCAG-AGCTCTCG 10936175 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 ||| | || || || ||||| || || ||||| || ||||| |||||| Sbjct 10936174 ACTTCCAGAGTGATCGTCTTTCCCGTCAGGGTTTTGACGAAGATCTGCATT 10936124 Score = 96.9 bits (106), Expect = 3e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||| ||||| || || ||||| ||||||||| ||||||||||| ||||| || Sbjct 10928105 AGCCTGAGCACGAGGTGGAGCGTTGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGG 10928046 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | |||||| ||||| || ||||| |||||||||||| || | | ||| Sbjct 10928045 CCATCTTCGAGTTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGAGGGATCCCCTCC 10927986 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGCATTCGACCGT 34088 |||||| || || ||| | | | | |||| || | || ||||| || Sbjct 10927985 TTGTCCTGGATCTTGGCCTTGACGTTGTCGATTGTGTCAG-AGCTCTCCACTTCGAGAGT 10927927 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 || ||||| |||||||| |||||||| ||||| ||||| || Sbjct 10927926 GATCGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCATATT 10927885 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 |||| ||||| || || ||||| ||||||||| ||||||||||| ||||| || Sbjct 10867992 AGCCTGAGCACGAGGTGGAGCGTTGACTCCTTCTGGATGTTGTAATCGGCCAAGGTGCGG 10867933 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | |||||| ||||| || ||||| |||||||||||| || | | ||| Sbjct 10867932 CCATCTTCGAGTTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGAGGGATCCCCTCC 10867873 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TCGCATTCGACCGT 34088 |||| | || || ||| | | | | |||| || | || ||||| || Sbjct 10867872 TTGTGCTGGATCTTGGCCTTGACGTTGTCGATTGTGTCAG-AGCTCTCCACTTCGAGAGT 10867814 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 || ||||| |||||||| |||||||| ||||| ||||| || Sbjct 10867813 GATCGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCATATT 10867772 >seq965 Length=51047765 Score = 93.3 bits (102), Expect = 3e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 ||||| |||||||| || || || ||||||||| || ||||| || ||||| |||| Sbjct 46933590 AGCCGAAGCACCAGGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCGGCCAAGGTTCGC 46933531 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| || | ||||||||||| || || ||||||||||| ||| || | | ||| Sbjct 46933530 CCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGTGGGATACCCTCC 46933471 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGTT 34089 |||||| || || ||| | | | | || | || || || | |||| Sbjct 46933470 TTGTCCTGGATCTTCGCCTTGACGTTGTCGATTGTGTCGGAGGACTCCACCTCCAACGTT 46933411 Query 34090 ATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 || || || || ||||| |||||||| ||||| ||||| || Sbjct 46933410 ATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTT 46933370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397055634801196