Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1030 113 5e-20 seq616 95.1 1e-14 seq1229 89.7 6e-13 >seq1030 Length=25649276 Score = 113 bits (124), Expect = 5e-20 Identities = 370/568 (65%), Gaps = 13/568 (2%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||||||||| || || ||||| | || || ||||| | ||| ||||| | || Sbjct 1352102 GTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTTAATCCCGGCATTAACCC 1352043 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 ||||| || | ||| || ||||| ||||| || |||||||| || |||||||| || Sbjct 1352042 GCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATCCCCTCCACGCA 1351983 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGC 126237 || ||||| | | | ||| || || | ||| ||| | ||| || | ||| Sbjct 1351982 AGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGA---GCCGTCGATCCAATTTAACGC 1351926 Query 126238 CCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTT 126297 |||| || || || ||| || || || |||| ||| || | |||||| ||||| Sbjct 1351925 CCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGTGAAAGAGACGGTTCTT 1351866 Query 126298 TTCTGATGGA-TCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCA 126356 ||| | ||| ||||||||||| | |||| || || || ||||| ||||| Sbjct 1351865 TTC-GTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACATTTCGGAGTGGA--T 1351809 Query 126357 TTTCATTATGGC--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATC 126414 ||| ||||| || | ||||||| | ||| || ||| | ||| ||||| | Sbjct 1351808 GTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGAGCCTCGGCGACCTGGACCTC--C 1351751 Query 126415 GGCA--AAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCC 126472 | || || | || ||||| | || || || ||||| | || || || || Sbjct 1351750 GTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCGAAGAAGGCG 1351691 Query 126473 AGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCAAGATCC 126532 || | | | | | ||| | || || | || | |||| || ||||| | ||||| Sbjct 1351690 AGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGGCGGAGATCT 1351631 Query 126533 TTCGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTCTTATAGAGTTCC 126592 | ||| ||||| || ||||| ||||||||| | || || ||||| || | |||| Sbjct 1351630 TGCGAAAGATCAACTTCCTCAGCAGTCCAAAACGACGCTTCGGCTTTCTTGTACATTTCC 1351571 Query 126593 CAAAGGTGGGGATACTTCAGGGGGAACA 126620 |||| || || |||| | ||||||| Sbjct 1351570 CAAATTTGTGGGTACTGAATCGGGAACA 1351543 >seq616 Length=36375926 Score = 95.1 bits (104), Expect = 1e-14 Identities = 267/403 (66%), Gaps = 8/403 (2%) Strand=Plus/Plus Query 10837 GTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAA 10896 ||| || || || || |||| ||| || || | ||||| |||||||| || ||||| Sbjct 11420567 GTTAGTTGCAGCAATCACAATGATACCAGTATTACCCTCAAAACCATCCATTTCTGTCAA 11420626 Query 10897 GAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCA--CCCGCACTGCGT 10954 || || || | ||| || || | |||||||||| | | | | | || | | | | Sbjct 11420627 AAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCCT--CCTCCAATTCCAGTTCCTCTT 11420684 Query 10955 TGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTC-ACGGGC 11013 || | || ||||| ||||||||||| | || || || || || ||| || || | Sbjct 11420685 TGTCTTCCAACGGCATCAATTTCATCCACAAATACAATGCAAGGAGCATTCTCTTTGGCC 11420744 Query 11014 AACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACAAAATT 11073 ||| ||| | |||||||||||| ||||| ||||| |||||||| || ||||| | Sbjct 11420745 TTCTTGAAA-AGATCTCGGACTCTAGATGCACCAACACCAACAAACATCTCAACAAACTC 11420803 Query 11074 GGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGA 11132 | | | | || | || || || || || |||||| || || || ||| || | Sbjct 11420804 AGAACCTG-ATATGGAGAAAAATGGAACACCGGCTTCACCAGCAATTGCCTTGGCAAGAA 11420862 Query 11133 GGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCAC 11192 | |||||||| || || || || ||||||| |||| ||| || | || ||| Sbjct 11420863 GAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACCCTTTGGAATACGAGCTCCAA 11420922 Query 11193 TTCCAAAGTAGCGCTCAGGTTGTTTAAGGAAGTCCACGATTTC 11235 | || | | |||||| | |||||||| ||||| | ||| Sbjct 11420923 TAGCAGTAAATCTCTCAGGCTTCTTAAGGAACTCCACCACTTC 11420965 >seq1229 Length=21133251 Score = 89.7 bits (98), Expect = 6e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 126058 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACC 126117 |||||| || || || || ||||| || || ||||||||| || || ||||| | || Sbjct 20051111 GTGGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGAAGGTTAGGCCCGGCATTAACCC 20051052 Query 126118 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACA 126177 ||||| |||||||| || ||||| || || ||||||||||| || || ||||| || Sbjct 20051051 GCGCTTTTTCAACCAAAATATCGCGCAGAAACTGCCCGAGAAGAATATCCCTTCCACGCA 20050992 Query 126178 CGCGAACGCAAAGAGACGCTCAGCAAA 126204 || ||||| | || | ||| || || Sbjct 20050991 GGCAAACGCTATCAGTCTCTCCGCGAA 20050965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597343161245840