Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq965 107 2e-18 seq1282 104 2e-17 seq1030 104 2e-17 seq1165 102 8e-17 seq1 102 8e-17 >seq965 Length=51047765 Score = 107 bits (118), Expect = 2e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || || ||||||||| || || ||| ||| ||||| || || |||| Sbjct 46933566 GACTCCTTCTGGATATTGTAGTCGGCCAAGGTTCGCCCGTCTTCGAGCTGCTTGCCGGCG 46933507 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || ||||| || ||||| ||| || || | Sbjct 46933506 AAGATGAGGCGCTGCTGGTCCGGTGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACG 46933447 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| ||||||||||| | ||| | || ||||| || || ||||| Sbjct 46933446 TTGTCGATTGTGTCGGAGGACTCCACCTCCAACGTTATGGTCTTACCCGTTAGGGTTTTC 46933387 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 46933386 ACGAAGATCTGCAT 46933373 >seq1282 Length=25111302 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 ||||||||||||| |||||||||||| | || | ||||||||| || || |||| Sbjct 21394921 TTGACTCCTTTTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGCTTTCCGG 21394980 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| |||||||| |||||||| || || || || ||||| ||| || || | Sbjct 21394981 CGAAGATGAGACGCTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTGA 21395040 Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 |||| || | |||||| | || || ||||| | || | || || || || || ||| Sbjct 21395041 CATTG-TCGATGGTGTCCGATGATTCGACCTCTAGGGTTATGGTCTTTCCCGTTAGGGTT 21395099 Query 138598 TTTACAAAAATCTGCATGGCT 138618 || || || |||||||||||| Sbjct 21395100 TTCACGAAGATCTGCATGGCT 21395120 >seq1030 Length=25649276 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 ||||||||||||| |||||||||||| | || | ||||||||| || || |||| Sbjct 22532792 TTGACTCCTTTTGGATGTTGTAGTCGGCTAGGGTTCTGCCGTCCTCGAGCTGCTTTCCGG 22532733 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| |||||||| |||||||| || || || || ||||| ||| || || | Sbjct 22532732 CGAAGATGAGACGCTGCTGGTCCGGTGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTGA 22532673 Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 ||||| | | |||||| | || || ||||| | || | || || || || || ||| Sbjct 22532672 CATTGT-CGATGGTGTCCGATGATTCGACCTCTAGGGTTATGGTCTTTCCCGTTAGGGTT 22532614 Query 138598 TTTACAAAAATCTGCATGGCT 138618 || || || |||||||||||| Sbjct 22532613 TTCACGAAGATCTGCATGGCT 22532593 >seq1165 Length=25613772 Score = 102 bits (112), Expect = 8e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||| || || || ||| ||||||||| || || |||| Sbjct 10317632 GACTCCTTCTGGATGTTGTAATCCGCCAAGGTGCGCCCGTCCTCGAGCTGCTTTCCGGCG 10317573 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| |||||||| || || ||||| ||||| ||| || || | Sbjct 10317572 AAGATCAGCCGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGGATCTTAGCCTTGACG 10317513 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| ||||||||||| || | || || || |||| |||||| Sbjct 10317512 TTGTCGATCGTGTCGGAGCTCTCCACCTCGAGAGTGATGGTCTTGCCGGTCAAAGTTTTC 10317453 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 10317452 ACAAAGATCTGCAT 10317439 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || || |||||||||||||| ||| || ||| || ||| |||||||| || || | | Sbjct 10936090 GATTCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCTTCGAGTTGCTTCCCAGCA 10936031 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| |||||||| || || || || ||||| ||| || || | Sbjct 10936030 AAGATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTGACG 10935971 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| |||||| |||| || | || || || || || ||||| Sbjct 10935970 TTGTCGATTGTGTCGGAGCTCTCCACTTCGAGGGTGATTGTCTTGCCGGTGAGGGTTTTC 10935911 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 10935910 ACAAATATCTGCAT 10935897 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||| | || | ||| | | | |||||||| ||||||||||| || | Sbjct 12024841 CCACCTCGGAGACGGAGGACGAGATGGAGGGTGGACTCCTTCTGAATGTTGTAATCAGCC 12024782 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||||| |||||| || || || || | |||| || | ||| || || || || Sbjct 12024781 AGAGTACGCCCGTCCTCAAGCTGCTTCCCAGCGAAGATGAGCCTCTGCTGATCAGGTGGG 12024722 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCCA 138565 || ||||| ||||| ||| | || | ||| |||| || | ||| || | ||| | Sbjct 12024721 ATCCCTTCCTTGTC-CTGAATCTTGGCTTTGACATTG-TCAATGGTATCAGAACTCTCTA 12024664 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| | || | ||| || || |||| || || ||||||||||||||| Sbjct 12024663 CCTCCAGGGTAATCGTCTTCCCGGTCAATGTCTTAACAAAAATCTGCATG 12024614 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||||||||| ||| | ||| || |||||||| || || |||| Sbjct 10318088 GACTCCTTTTGAATGTTGTAATCGGCGAGAGTCCGGCCATCCTCGAGCTGCTTGCCGGCG 10318029 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||||||||| || || |||||||| ||| || || | Sbjct 10318028 AAGATGAGCCTCTGCTGGTCCGGAGGAATCCCCTCTTTGTCCTGGATCTTGGCCTTCACG 10317969 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||||||| ||||||||| | || | ||| || || |||| || || Sbjct 10317968 TTGTCGATCGTGTCGGAGCTCTCCACCTCCAGGGTAATCGTCTTCCCGGTCAACGTCTTG 10317909 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 10317908 ACGAAGATCTGCAT 10317895 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || |||||||| || ||||| ||| || || || ||| ||||| ||||| |||| Sbjct 12024124 GATTCCTTTTGGATATTGTAATCGGCCAAGGTGCGGCCGTCTTCGAGCTGTTTTCCGGCG 12024065 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||||||||| || ||||| ||||| ||| || || | Sbjct 12024064 AAGATCAGACGCTGCTGGTCCGGAGGGATTCCTTCCTTGTCTTGGATCTTGGCCTTGACG 12024005 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||||| ||| || |||| || | || || || || || ||||| Sbjct 12024004 TTGTCGATGGTGTCGGAGCTCTCGACTTCGAGAGTAATGGTCTTGCCGGTTAGGGTTTTC 12023945 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 12023944 ACGAAGATCTGCAT 12023931 Score = 82.4 bits (90), Expect = 8e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| ||||| || || ||||| ||| || || || |||||||||||| || |||| Sbjct 12024354 TTGATTCCTTCTGGATATTGTAATCGGCCAAGGTGCGGCCGTCCTCGAGTTGCTTTCCGG 12024295 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| || | ||| |||||||| || || ||||| ||||| ||| || || | Sbjct 12024294 CGAAGATCAGCCTCTGCTGGTCCGGCGGAATCCCTTCCTTGTCCTGGATCTTGGCCTTGA 12024235 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | ||||||| ||| || |||| || | || || || || || |||| Sbjct 12024234 CGTTGTCGATCGTGTCGGAGCTCTCAACTTCGAGAGTAATGGTCTTGCCGGTTAGGGTTT 12024175 Query 138599 TTACAAAAATCTGCATGGCT 138618 | || || ||||||||| || Sbjct 12024174 TCACGAAGATCTGCATGCCT 12024155 >seq1 Length=28940139 Score = 102 bits (112), Expect = 8e-17 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | || ||||| | | |||||||||| || ||||||||||| Sbjct 20996488 GCCACCACGGAGACGAAGCACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGC 20996429 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | |||||| || || |||||||| |||| | |||||| | |||||| || || || Sbjct 20996428 AAGAGTACGACCATCTTCAAGTTGTTTGCCGGCAAAGATTAACCTCTGTTGATCAGGTGG 20996369 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| || || || | |||| || | ||||| | || | Sbjct 20996368 GATGCCCTCCTTGTCCTGTATCTTGGCCTTGACATTG-TCGATCGTGTCAGAGCTTTCAA 20996310 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 |||| | || | || ||||||||||| ||||| ||||||||||||||| Sbjct 20996309 CCTCCAAAGTTATAGTCTTACCAGTCAGGGTTTTCACAAAAATCTGCATG 20996260 Score = 100 bits (110), Expect = 3e-16 Identities = 151/211 (72%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 || ||||| | | |||| ||||| || ||||||||||| | || || ||||| Sbjct 20996241 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCATCCTCT 20996182 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 ||||||||||||| | |||| || | || ||||| || || || ||||| || || || Sbjct 20996181 AGTTGTTTACCGGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATC-CTG 20996123 Query 138526 ATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTT 138583 | |||| | ||| |||| || | |||||||| |||||||| | || | || | Sbjct 20996122 AATTTTGGCTTTGACATTG-TCAATGGTGTCGGAGCTTTCCACCTCAAGGGTGATAGTCT 20996064 Query 138584 TACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | ||||| || || |||||||| |||||||| Sbjct 20996063 TTCCAGTGAGGGTCTTTACAAAGATCTGCAT 20996033 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTC-GCT 138446 || || || | ||| | || || || | | |||||||||| || ||||||||||| ||| Sbjct 21029655 CCACCACGGAGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCT 21029596 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | |||||| || || |||||||| || | | |||| | | ||| || || ||||| Sbjct 21029595 -AGAGTACGGCCATCTTCAAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCGGGAGG 21029537 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG--TTTTAATTGTTCCACGGTGTCGGTCGACTCC 138564 || || || ||||| ||| | || | || |||| || | ||||| | || Sbjct 21029536 GATGCCCTCCTTGTC-CTGAATCTTAGCCTTGACATTG-TCGATTGTGTCAGAGCTTTCA 21029479 Query 138565 ACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| | || | |||||||||||||| ||||| |||||||||||||| Sbjct 21029478 ACCTCCAAAGTTATAGTTTTACCAGTCAGGGTTTTCACAAAAATCTGCAT 21029429 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 138406 ACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG 138465 || ||||| | | |||| ||||| || ||||||||||| | || || ||||| Sbjct 21029409 ACCAAATGAAGGGTTGATTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGTCCATCCTCA 21029350 Query 138466 AGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTG 138525 |||||||| || | | |||| || | || ||||| || || || ||||| || || || Sbjct 21029349 AGTTGTTTGCCAGCAAAGATGAGCCTTTGCTGGTCTGGTGGGATCCCTTCCTTATC-CTG 21029291 Query 138526 ATTTTTTGTTTT--AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTT 138583 | |||| | ||| |||| || | |||||| | |||||||| | || | || | Sbjct 21029290 AATTTTGGCTTTGACATTG-TCAATGGTGTCCGAGCTTTCCACCTCAAGGGTAATGGTCT 21029232 Query 138584 TACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 | ||||| || || |||||||| || |||||| Sbjct 21029231 TTCCAGTGAGGGTCTTTACAAAGATTTGCATG 21029200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496253727814560