Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1030 111 2e-19 seq1229 82.4 9e-11 >seq1030 Length=25649276 Score = 111 bits (122), Expect = 2e-19 Identities = 373/570 (65%), Gaps = 17/570 (3%) Strand=Plus/Minus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 |||||||||||| || || ||||| | || || ||||| | || ||||| | || Sbjct 1352102 GTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTTAATCCCGGCATTAACCC 1352043 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 ||||| || | ||| || ||||| ||||| || |||||||| ||||||||||| || Sbjct 1352042 GCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATCCCCTCCACGCA 1351983 Query 127651 CGCGAACGCAAATAGACGCTCGGC-AAAGGAGCGGGACTTTGTATCAAACCACTTCATCG 127709 || ||||| | || | ||| || |||| | | | || | ||| || | || Sbjct 1351982 AGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAGC----CGTCGATCCAATTTAACG 1351927 Query 127710 CCCACTGTGCCTTT-TTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTC 127768 ||||| ||| |||| || ||| || || || |||| ||| || | |||||| ||| Sbjct 1351926 CCCAC-GTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGTGAAAGAGACGGTTC 1351868 Query 127769 TTTTCTGATGGA-TCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGAC 127827 ||||| | ||| ||||||||||| | |||| || || || ||||| ||||| Sbjct 1351867 TTTTC-GTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACATTTCGGAGTGGA- 1351810 Query 127828 CATTTCATTATGGC--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCA 127885 ||| ||||| || | ||||||| | ||| || ||| | ||| ||||| Sbjct 1351809 -TGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGAGCCTCGGCGACCTGGACCTC- 1351752 Query 127886 TCGGCA--AAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACG 127943 || || || | || ||||| | || || || ||||| | || || || | Sbjct 1351751 -CGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTGCGAAGAAGG 1351693 Query 127944 CCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCGAGAT 128003 | || | | | | | ||| | || || | || | |||| || ||||| | ||||| Sbjct 1351692 CGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCTCCCAGTGGCGGAGAT 1351633 Query 128004 CCTTTGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTCTTATAGAGTT 128063 | | || ||||| || ||||| ||||||||| | || || ||||| || | || Sbjct 1351632 CTTGCGAAAGATCAACTTCCTCAGCAGTCCAAAACGACGCTTCGGCTTTCTTGTACATTT 1351573 Query 128064 CCCAGAGGTGGGGATACTTCAGGGGGAACA 128093 |||| | || || |||| | ||||||| Sbjct 1351572 CCCAAATTTGTGGGTACTGAATCGGGAACA 1351543 >seq1229 Length=21133251 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCT-GTGGA 115961 |||||||||| || ||||||||||||||||||||||| |||||| | |||| || || Sbjct 17546046 TAGATGTTGGAAGTATATGGCTCAAAGCACTCATTGTT-TCCAAGAATCTGGCTGGTTGA 17546104 Query 115962 GGCTGTGGGCATGGGTGCCATGAGAAG 115988 ||| || ||||| ||||||| ||||| Sbjct 17546105 GGCAGTTGGCATTGGTGCCACAAGAAG 17546131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613496478961680