Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq1229 141 1e-28 seq1030 132 8e-26 >seq1229 Length=21133251 Score = 141 bits (156), Expect = 1e-28 Identities = 542/843 (64%), Gaps = 31/843 (4%) Strand=Plus/Minus Query 159648 TCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGT 159707 ||||||| || || || ||||| || | || || || | ||||| | | || || | Sbjct 20051397 TCTTCTCAAAGAAATTCGTCTTCCCTTGCAGCGAAATCAACTCCATCCAATCAAACGGAT 20051338 Query 159708 TCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATT 159767 || ||||| || |||| | ||||| || ||| |||||| ||||||||||| | Sbjct 20051337 TCGTCACGCCGTACACCTTCCCGCACCCGAGCGCGCCCAACAACCTATCTGCCACAAACT 20051278 Query 159768 CGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGC-CTAACGGGGAGCGCTTCC 159826 | ||||| || |||| | | | ||| ||||||| || | |||| ||||| || Sbjct 20051277 CTATGTACTGACTCATCAACGCCCCGTTCATCCCCACCAATGCGCACGGC-AGCGCGTCG 20051219 Query 159827 GACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTAC 159886 ||| |||||| |||| ||||| ||||| || |||| ||| | || || || | Sbjct 20051218 CACACGAACTCCCTCTCTATCTCCACCGCCTCCTTCACTATCCCCATCACGCGCTCCTC- 20051160 Query 159887 CCCGGCTTGCCCAAAATGTGGTCCTTAA--------ACAGGAGGCACGCAAAGTCGCAGT 159938 |||| ||| || |||| | ||| | |||||| || ||||||| Sbjct 20051159 ----GCTT------AATTTGTTCCTCAGCAAGCTGTACAACAAGCACGCGAAATCGCAGT 20051110 Query 159939 GCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCAC 159998 | ||||| || || || ||||| | |||||| || | | | ||||||||||| | ||| | Sbjct 20051109 GGAGTCCTTCATCTCGCGAGATTAGCTCGTTCGAGAAGGTTAGGCCCGGCATTAACCCGC 20051050 Query 159999 GCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCTCCACGGCC 160057 || ||| | |||||| || | |||| || | | | | || || ||||| |||||| Sbjct 20051049 GCTTTTTCAACCAAAATATCG-CGCAGAAACTGCCCGAGAAGAATATCCCTTCCACGCAG 20050991 Query 160058 GCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCC 160117 |||||||| | || ||||| | | | | | | | | | | |||| || |||| Sbjct 20050990 GCAAACGCTATCAGTCTCTCCGCGA---ATGTCTCCGAGCCGTCGATCCAATTTAGGGCC 20050934 Query 160118 CATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTTAAACAATCTGTCCTGC 160177 || || ||||| || || | |||||||| || | |||| ||| || | | || Sbjct 20050933 CAATCGGCCTTTTTGGCAACGCACGGCACCGTTTCAAAGGCGCGAAATAAGCGGCTCTTT 20050874 Query 160178 TCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTT 160237 || | | || || || | | || |||||||||||| | ||| | || Sbjct 20050873 TCGTCGGAGTTTTTTATGTACGTTTCTAGAAGGAGCGAGTACATTTCGGAGTGGATGTTC 20050814 Query 160238 TCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGATAC-TGCACCTCCTGTGT 160296 |||||||| || || ||| |||||| ||||| | || || || || || | | Sbjct 20050813 TCGATGGCGATTTGGAAGCCGTAGAAGGCACGCGCCT-CGGAGACTTGGACTTCTTTCAT 20050755 Query 160297 GAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACAC 160356 |||||| | || || | || | || || | ||| || ||||| || | ||| Sbjct 20050754 GAACCTGGCGGCGAGGTTTTCGAGGACGATTCCATCCGAGGCGGCGAAGAAGGCGAGCAC 20050695 Query 160357 GTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCACGTCTTG 160416 ||| | |||||| ||| ||||||| | | || |||||| || | ||| || Sbjct 20050694 GTGCGTGATGAAGTGTTTCTCGTCGGCGGTTAG---GGATTCCCACTGGCGGATGTCCTG 20050638 Query 160417 GGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAGTTTTGTACATGGCCCA 160476 | || || ||||| ||||| ||||| | ||| | || | |||||||| |||| Sbjct 20050637 CGACAGGTCGACCTCCTCCGCCGTCCAAAATGAAGCTTCGGCTTTCTTGTACATTTCCCA 20050578 Query 160477 GAT 160479 ||| Sbjct 20050577 GAT 20050575 >seq1030 Length=25649276 Score = 132 bits (146), Expect = 8e-26 Identities = 418/640 (65%), Gaps = 12/640 (2%) Strand=Plus/Minus Query 159744 CCAGCAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCA 159803 ||| ||| || || || ||||| || ||||| || |||| || | || ||||||| Sbjct 1352292 CCAACAATCTATCCGCGACAAACTCTATGTACTGACTCATCAATTCTCCATTCATCCCCA 1352233 Query 159804 GCAGC-CTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTC 159862 || | | |||| ||||| || ||| |||||| |||| ||||| ||||| || || Sbjct 1352232 CCAACGCGCACGGC-AGCGCATCGCACACAAACTCTCTCTCTATCTCCACCGCCTCCTTC 1352174 Query 159863 ACAATCTGCGAGACACGTTCGTACCCCGGCTT-GCCCAAAATGTGGTCCTTAAACAGGAG 159921 || | | | || | || | | |||| | || ||| | ||| || Sbjct 1352173 ACTAACGCCTTCACTCTCTCCTCGCTTAGCTTCGTCCTCAATAAACTGT----ACAACAG 1352118 Query 159922 GCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAG 159981 |||||| || |||||||| || ||||| || || ||||| |||||||| || | | | Sbjct 1352117 GCACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTTAA 1352058 Query 159982 GCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAA-A 160040 |||||||| | ||| ||| |||||||||||| || || |||||| | || | || | Sbjct 1352057 TCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGC-GCAAAAACTCCCTGAGAAGA 1351999 Query 160041 AGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCAT 160100 | |||||||||||| |||||||| | | ||||| | ||| | | | | | | Sbjct 1351998 AAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAA---GTCTCCGAGCCGT 1351942 Query 160101 GGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGT 160160 | |||| || ||||| || |||||||||| ||| || | ||||| ||||| Sbjct 1351941 CGATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGT 1351882 Query 160161 TAAACAATCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACA 160220 ||| | | || || || | || ||||| ||| | | ||| |||||||| Sbjct 1351881 GAAAGAGACGGTTCTTTTCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGAGTACA 1351822 Query 160221 TTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGAT 160280 |||| | ||| | || |||||||| || || ||| |||||| ||||| Sbjct 1351821 TTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGAGCCTCGGCGA 1351762 Query 160281 ACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCG 160340 ||| |||||| |||||||| | || || | || | ||||||| ||| | Sbjct 1351761 CCTGGACCTCCGTCATGAACCTTCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCTG 1351702 Query 160341 CAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTC 160380 | ||||| || | |||||| | || ||| || ||||||| Sbjct 1351701 CGAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTC 1351662 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795141304662880