Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq1165 98.7 7e-16 seq1 87.8 1e-12 >seq1165 Length=25613772 Score = 98.7 bits (108), Expect = 7e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 39508 AGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCG 39567 || || | |||||||||| ||||||||| || || |||||||||||| ||| | || Sbjct 10936108 AGGACAAGATGCAAAGTGGATTCTTTTTGAATGTTGTAATCGGCCAAAGTGCGGCCGTCT 10936049 Query 39568 TCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCG 39627 || | ||| ||||| |||| || | ||||||||| |||| || | || || ||||| Sbjct 10936048 TCGAGTTGCTTCCCAGCAAAGATGAGACGCTGCTGGTCCGGCGGAATTCCCTCCTTGTCC 10935989 Query 39628 CATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGT 39686 || || || | ||| | | | |||||| | ||| ||||| || | || ||||| Sbjct 10935988 TGGATCTTGGCCTTGA-CGTTGTCGATTGTGTCGGAGCTCTCCACTTCGAGGGTGATTGT 10935930 Query 39687 TTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || | ||||| || || |||||||| Sbjct 10935929 CTTGCCGGTGAGGGTTTTCACAAATATCTGCAT 10935897 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 ||||| |||| ||| | || || || || || |||||||| || | | | | || Sbjct 10817340 CGCAGAACCAGATGAAGGGTCGACTCCTTCTGGATGTTATAATCCGCAAGAGTCCTTCCA 10817281 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || || | ||||| || | || || |||||||||||||||| || | ||||| ||| Sbjct 10817280 TCCTCAAGCTGTTTGCCAGCGAAGATCAAACGCTGCTGATCCGGTGGAATTCCTTCCTTG 10817221 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || |||||| || | | | | |||||||| ||| || || |||||||||||| Sbjct 10817220 TCTTGGATTTTTGCCTTGACATTGTCAATTGTGTCTGAGCTCTCAACTTCCAAAGTAATT 10817161 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 ||||| || || | || || || || ||||||||| Sbjct 10817160 GTTTTCCCAGTAAGGGTCTTAACAAATATCTGCATG 10817125 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| || || | ||| || |||| ||| | || ||| ||||| ||||| |||||||| Sbjct 12024158 GCCTCCACGGAGACGAAGCACCAGATGAAGCGTCGATTCCTTTTGGATATTGTAATCGGC 12024099 Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611 ||| ||| | || || | ||||| ||| | || || | ||||||||| |||| || Sbjct 12024098 CAAGGTGCGGCCGTCTTCGAGCTGTTTTCCGGCGAAGATCAGACGCTGCTGGTCCGGAGG 12024039 Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCA 39670 | ||||| ||||| || || || | ||| | | | ||||| | ||| || | Sbjct 12024038 GATTCCTTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGCTCTCGA 12023980 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | |||||| || || || |||| ||||| |||||||||||||| Sbjct 12023979 CTTCGAGAGTAATGGTCTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 12023931 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || || || ||||||||||| ||| |||| || | ||| || ||| | || Sbjct 10928078 TCCTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAG 10928019 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | |||||||||||||| || | || || ||||| || || || | ||| Sbjct 10928018 ATCAGACGCTGCTGATCCGGAGGGATCCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTT 10927960 Query 39649 G-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | | |||||| | ||| ||||| || | ||| || ||||| || |||| ||||| || Sbjct 10927959 GTCGATTGTGTCAGAGCTCTCCACTTCGAGAGTGATCGTTTTGCCGGTTAGGGTTTTCAC 10927900 Query 39708 GAAGATCTGCAT 39719 |||||||||||| Sbjct 10927899 GAAGATCTGCAT 10927888 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 || || || || || ||||||||||| ||| |||| || | ||| || ||| | || Sbjct 10867965 TCCTTCTGGATGTTGTAATCGGCCAAGGTGCGGCCATCTTCGAGTTGCTTTCCGGCGAAG 10867906 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTC 39648 || | |||||||||||||| || | || || |||| || || || | ||| Sbjct 10867905 ATCAGACGCTGCTGATCCGGAGGGATCCCCTCCTTGTGCTGGATCTTGGCCTTGA-CGTT 10867847 Query 39649 G-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTAC 39707 | | | |||||| | ||| ||||| || | ||| || ||||| || |||| ||||| || Sbjct 10867846 GTCGATTGTGTCAGAGCTCTCCACTTCGAGAGTGATCGTTTTGCCGGTTAGGGTTTTCAC 10867787 Query 39708 GAAGATCTGCAT 39719 |||||||||||| Sbjct 10867786 GAAGATCTGCAT 10867775 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 ||||| | || ||||| |||| ||| | ||| || || || || || ||||| || Sbjct 10936351 CCGCCCCTCAGACGCAACACCAGATGAAGAGTCGACTCCTTCTGAATGTTGTAATCCGC- 10936293 Query 39553 AAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGG 39610 || || | | |||| |||| || ||||| |||| || | ||||||||||| | | Sbjct 10936292 -AAGCGTCCTTCCATCCTCCAGCTGCTTCCCAGCAAAGATCAGGCGCTGCTGATCAGGTG 10936234 Query 39611 GTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTTTCC 39669 | | |||||||| || |||||| || | ||| | | || |||| | ||| || Sbjct 10936233 GGATCCCTTCTTTATCCTGGATTTTTGCCTTGA-CGTTGTCAATGGTGTCAGAGCTCTCG 10936175 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||| ||| || || || ||||| | ||||| |||||||||||||| Sbjct 10936174 ACTTCCAGAGTGATCGTCTTTCCCGTCAGGGTTTTGACGAAGATCTGCAT 10936125 >seq1 Length=28940139 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 || || ||||| || | |||| |||||| || || ||||| || || | | | | || Sbjct 20996703 CGAAGAACCAAGTGAAGAGTGGATTCTTTCTGGATGTTATAGTCTGCAAGAGTCCTTCCA 20996644 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || || | || || || ||||||| | | ||||||||| | || | || || ||| Sbjct 20996643 TCTTCAAGCTGCTTTCCAGCAAAAATGAGCCTCTGCTGATCTGGTGGGATACCCTCCTTG 20996584 Query 39625 TCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAAT 39683 || |||||| ||| | ||| | | | ||||| | ||||| || || | |||||| Sbjct 20996583 TCCTGAATTTTTGCTTTCA-CGTTGTCGATGGTGTCAGAACTTTCAACCTCAAGAGTAAT 20996525 Query 39684 TGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 |||||| || || | ||||| || |||||||||||| Sbjct 20996524 TGTTTTTCCGGTGAGGGTTTTCACAAAGATCTGCATG 20996488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347363681473334