Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq616 149 8e-31 seq1103 87.8 2e-12 seq1030 82.4 9e-11 >seq616 Length=36375926 Score = 149 bits (164), Expect = 8e-31 Identities = 316/463 (68%), Gaps = 14/463 (3%) Strand=Plus/Plus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAA 15976 |||||| || || | | || ||||| || || |||| ||||| || | ||||| Sbjct 11420549 ATCAAGAATGTCCGCCCTGTTAGTTGCAGCAATCACAATGATACCAGTATTACCCTCAAA 11420608 Query 15977 ACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 16036 ||||||||| ||||||||||||||||||| || || || | |||||||||| || | | Sbjct 11420609 ACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCCT--CCT 11420666 Query 16037 ACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCAT 16094 | | |||| | | ||| |||| ||||||||||| ||||| | || || ||||| Sbjct 11420667 CCAATTCCAGTTCCTCTTTGTCTTCCAACGGCATCAATTTCATCCACAAATACAATGCAA 11420726 Query 16095 GGTTGATTTTC-GCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAAC 16153 || ||| || | | ||| ||| ||||| || || | || || |||||||| Sbjct 11420727 GGAGCATTCTCTTTGGCCTTCTTGAAA-AGATCTCGGACTCTAGATGCACCAACACCAAC 11420785 Query 16154 AAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCG 16212 ||||||||| ||||| | | | | | || | || || || ||| | |||||| | Sbjct 11420786 AAACATCTCAACAAACTCAGAACCTG-ATATGGAGAAAAATGGAACACCGGCTTCACCAG 11420844 Query 16213 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTC 16272 |||| || ||| ||||||||||| || || ||||| ||| |||| || |||| Sbjct 11420845 CAATTGCCTTGGCAAGAAGAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACCCT 11420904 Query 16273 GTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCT 16332 |||||| || ||| | || |||||||||| | |||||| || ||||| | Sbjct 11420905 TTGGAATACGAGCTCCAATAGCAGTAAATCTCTCAGGCTTCTTAAGGAACTCCAC---CA 11420961 Query 16333 CTTCC---AATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 16372 ||||| || || | ||| || | |||| || ||||||| Sbjct 11420962 CTTCCATGAAATCTTGTTTTGCCTCATCAACTCCGGCAACATC 11421004 >seq1103 Length=43299053 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/217 (71%), Gaps = 12/217 (6%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| |||||||| || ||||||||||| |||||||| || || | |||||| || || Sbjct 42541612 AAAGCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCT-- 42541555 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | | | || || | | || | ||||| |||||||| |||||||| || || || Sbjct 42541554 CCTCCAAGCCCTGCTCCTCTCTGTCTCCCCACAGCATCAATTTCATCAATAAACACAATA 42541495 Query 16092 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCAC 16147 || ||| |||| | || ||||| | ||||| ||| || | ||||| || Sbjct 42541494 CACGGT--GCCTTCGATTTGGCCTTCTCAAACAAATCCC--TCACTCTGGATGCGCCAAC 42541439 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 16184 ||||||||||| ||| ||||| | || ||| | |||| Sbjct 42541438 ACCAACAAACAACTCAACAAACTCTGAGGCAGCACAT 42541402 >seq1030 Length=25649276 Score = 82.4 bits (90), Expect = 9e-11 Identities = 154/223 (69%), Gaps = 10/223 (4%) Strand=Plus/Minus Query 111537 GACTTTGGTTATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCC-AAAG----ACTGG 111591 |||| || ||| ||||| |||| ||||| |||| ||||||| |||| | || Sbjct 17554808 GACTATGATTACTTTGGCTTCAAAACCCTTGAGAGGTCCTACCTCTTAAAGGTCCAAGGG 17554749 Query 111592 ATGGTGTCTTGATGGAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATG 111651 | ||| || | |||| || ||| | ||||| ||| |||| | || || || || Sbjct 17554748 AAGGT----TG-TAGAAAGACCTCAGCATATGTTGATGAGGGTATCTATTGGAATTCACA 17554694 Query 111652 GGGAAGATATTGATTCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCC 111711 ||| ||||||||||||| | | | |||||| | | |||||||| | ||||| || Sbjct 17554693 AGGATGATATTGATTCTGCTATTAAAACATACCATATGATGTCCCAAAGATGGTTCACCC 17554634 Query 111712 ACGCAACACCAACCCTCTTCAACGCTGGTACACCAAGACCCCA 111754 | ||| | || || || || || ||||| || ||||| ||||| Sbjct 17554633 ATGCATCTCCTACACTTTTTAATGCTGGAACTCCAAGGCCCCA 17554591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620731552526560