Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq616 154 2e-32 seq1030 100 3e-16 seq1229 98.7 1e-15 seq1103 95.1 1e-14 >seq616 Length=36375926 Score = 154 bits (170), Expect = 2e-32 Identities = 315/462 (68%), Gaps = 12/462 (3%) Strand=Plus/Plus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAA 9283 |||||| || || | | || || || || || |||| ||||| || | | ||||| Sbjct 11420549 ATCAAGAATGTCCGCCCTGTTAGTTGCAGCAATCACAATGATACCAGTATTACCCTCAAA 11420608 Query 9284 ACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 9343 ||||||||| ||||||||||| ||||||| || || || | |||||||||| || | | Sbjct 11420609 ACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGCTCTCTTTCATCATTCCCT--CCT 11420666 Query 9344 ACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 | | |||| | | ||| |||| ||||||||||| ||||| | || ||||| || Sbjct 11420667 CCAATTCCAGTTCCTCTTTGTCTTCCAACGGCATCAATTTCATCCACAAATACAATGCAA 11420726 Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461 || ||| || ||| | | || ||||| || || || || || ||||||||| Sbjct 11420727 GGAGCATTCTCTTTGGCCTTCTTGAAAAGATCTCGGACTCTAGATGCACCAACACCAACA 11420786 Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9520 |||||||| ||||| | | | | | || | || || || ||| | |||||| || Sbjct 11420787 AACATCTCAACAAACTCAGAACCTG-ATATGGAGAAAAATGGAACACCGGCTTCACCAGC 11420845 Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCG 9580 ||| || ||| ||||||||||| || || ||||| ||| |||| || ||||| Sbjct 11420846 AATTGCCTTGGCAAGAAGAGTCTTCCCAGTTCCTGGAGGACCAACGAGAAGAACACCCTT 11420905 Query 9581 TGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 |||||| || ||| | || |||||||||| | ||| || || ||||| | | Sbjct 11420906 TGGAATACGAGCTCCAATAGCAGTAAATCTCTCAGGCTTCTTAAGGAACTCCAC---CAC 11420962 Query 9641 TTCC---AATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 9679 |||| || || | ||| || | |||| || ||||||| Sbjct 11420963 TTCCATGAAATCTTGTTTTGCCTCATCAACTCCGGCAACATC 11421004 >seq1030 Length=25649276 Score = 100 bits (110), Expect = 3e-16 Identities = 169/241 (70%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 107157 AACTGGACAT--CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAAT 107214 |||| |||| ||| || ||||| || |||||||| || || || || | ||| || | Sbjct 17554578 AACTAAACATGCCTGGGGCCTTGGAGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGT 17554637 Query 107215 GAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTG 107274 |||| | |||||||||| | | |||||| | | |||||||||| || ||| ||| Sbjct 17554638 GAACCATCTTTGGGACATCATATGGTATGTTTTAATAGCAGAATCAATATCATCCTTGTG 17554697 Query 107275 GATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAG 107334 || || || | || | ||| ||||| | || ||| |||| | | | || | || Sbjct 17554698 AATTCCAATAGATACCCTCATCAACATATGCTGAGGTCTTTCTACAACCTTCCCTTGGA- 17554756 Query 107335 CCGTTGA-AGATAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 107393 || || | || ||| | ||||||||||||||| ||||||||| || | ||| | |||| Sbjct 17554757 CCTTTAAGAGGTAGGACCTCTCAAGGGTTTTGAAGCCAAAGTAATCATAGTCAAAATCCC 17554816 Query 107394 G 107394 | Sbjct 17554817 G 17554817 Score = 96.9 bits (106), Expect = 4e-15 Identities = 169/245 (69%), Gaps = 7/245 (3%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||||||||||||||| || || | || |||||||| || || ||||| | || Sbjct 1352102 GTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGTTAATCCCGGCATTAACCC 1352043 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 ||||| || | |||| | || ||||| || ||| |||||||| || |||||||| || Sbjct 1352042 GCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAAGAAAATCCCCTCCACGCA 1351983 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGG--AGCGAGACTTTGTGTCAAACCATTTCATT 117462 |||||||| | | | ||| ||||| | |||| | ||| | ||| || | Sbjct 1351982 AGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAGCC-----GTCGATCCAATTTAAC 1351928 Query 117463 GCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTC 117522 ||||| | || ||||| | | || || || || | |||||| | ||| | | ||| Sbjct 1351927 GCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGCGTGAAAGAGACGGTTC 1351868 Query 117523 TTTTC 117527 ||||| Sbjct 1351867 TTTTC 1351863 >seq1229 Length=21133251 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 107167 CTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG 107226 ||| | ||||||||| |||||||| || || || || | ||| || | ||| | ||| Sbjct 17548559 CTGGGCTCTTGGTGTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTG 17548618 Query 107227 GGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGC 107286 |||||| | | |||||| | | ||||||||||||| ||| ||| || || | || Sbjct 17548619 AGACATCATATGGTATGTTTTGATAGCAGAATCAATGTCATCCTTGTGAATCCCAACAGC 17548678 Query 107287 CACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA-- 107344 || | ||| ||||| | ||||||| |||| | | | || | || | || |||| Sbjct 17548679 AACCCTCATCAACATATGTTGGGGTCTTTCTACAACTTTTCCTTGGA--CCTTCAAGAGG 17548736 Query 107345 TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCCG 107394 ||| | |||| |||||||||| ||||| ||| || | ||| | ||||| Sbjct 17548737 TAGGACCTCTCCAGGGTTTTGAAGCCAAAATAATCATAGTCAAAATCCCG 17548786 >seq1103 Length=43299053 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| |||||||| || |||||||| || |||||||| || || | |||||| || || Sbjct 42541612 AAAGCCATCCATTTCAGTCAAAAGCTGATTAATAGTCTGCTCTCTTTCATCGTTTCCT-- 42541555 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | | | || || | | || | ||||| |||||||| |||||||| || |||||| Sbjct 42541554 CCTCCAAGCCCTGCTCCTCTCTGTCTCCCCACAGCATCAATTTCATCAATAAACACAATA 42541495 Query 9399 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCA 9458 || ||| || ||| | ||||| | ||| | || || ||||| |||||| Sbjct 42541494 CACGGTGCCTTCGATTTGGCCTTCTCAAACAAATCCCTCACTCTGGATGCGCCAACACCA 42541435 Query 9459 ACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9491 ||||||| ||| ||||| | || ||| | |||| Sbjct 42541434 ACAAACAACTCAACAAACTCTGAGGCAGCACAT 42541402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589970490085520