Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq965 304 1e-77 >seq965 Length=51047765 Score = 304 bits (336), Expect = 1e-77 Identities = 384/525 (73%), Gaps = 2/525 (0%) Strand=Plus/Plus Query 168500 TGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTAATGATCCCA 168559 ||| |||| |||||| | ||| | ||||| |||||||||| ||||| || |||||||| Sbjct 18211486 TGGATAACTAGCACTGAAAACTGCCTTTACATTGGTTGGTTTGGTGTTTTGATGATCCCT 18211545 Query 168560 TGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACCACCTGTCGA 168618 |||||| || ||| | | ||| || ||| | || ||||||||||| || || || || Sbjct 18211546 ACTTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTTATTGCTGCTCCTCCAGTAGA 18211604 Query 168619 TATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAACATCATCTC 168678 ||| ||||| || | ||||||| | || ||||| | |||||||| || || || || Sbjct 18211605 TATTGACGGTATTCGTGAACCTGCTTCTGGATCTCTACTTTATGGAAATAATATTATTTC 18211664 Query 168679 AGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATTTGGGAAGC 168738 | || || |||| |||| | || || ||| | || || ||||| || |||||||| Sbjct 18211665 TAGCGCGATTATTCCTACTTCTACAGCTATAGGTTTGCATTTTTACCCGATATGGGAAGC 18211724 Query 168739 AGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATCTTCCACTT 168798 || | | ||||| |||||||| ||||| |||||||| || | | | | ||||| Sbjct 18211725 GGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTT 18211784 Query 168799 CCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAGACTAGGTAT 168858 | |||| || | || ||||||||| | |||||||| | | | | |||||||| Sbjct 18211785 CGTAATTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGTAT 18211844 Query 168859 GAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCT 168918 | | |||||||| |||||| |||| | | || || | ||||| ||| || ||| | Sbjct 18211845 GCGTCCTTGGATTGCTGTTGCATATTTAACTCCTGTTGCAGCAGCGACTGCTGTTTTCTT 18211904 Query 168919 TGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAAC 168978 | |||||| | ||||| || ||| ||||||||||||||||||||||| ||||| || Sbjct 18211905 GATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTAC 18211964 Query 168979 ATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTAT 169023 |||||||||||| | |||||||| || ||||||||||| ||||| Sbjct 18211965 TTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTAT 18212009 Score = 244 bits (270), Expect = 1e-59 Identities = 379/541 (70%), Gaps = 18/541 (3%) Strand=Plus/Plus Query 168500 TGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTAATGATCCCA 168559 ||| |||| || ||| | ||| | ||||| |||||||||| ||||| || |||||||| Sbjct 17866731 TGGATAACTAGTACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATGATCCCT 17866790 Query 168560 TGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACCACCTGTCGA 168618 |||||| || ||| | |||| || ||| | || || |||||||| || || | || Sbjct 17866791 ACTTTATTGACCGCAACTT-ATGTATTTATTATAGCCTTAATTGCTGCTCCTCCAATAGA 17866849 Query 168619 TATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAACATCATCTC 168678 ||| ||||| || |||||||| | || ||||| | |||||||| || || || | Sbjct 17866850 TATTGACGGTATTCATGAACCTGTTTCTGGATCTCTACTTTATGGAAATAATATTATTTT 17866909 Query 168679 AGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATTTGGGAAGC 168738 ||||| || |||| |||| || || ||| | || || ||||| || |||||||| Sbjct 17866910 TGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATATGGGAAGC 17866969 Query 168739 AGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATCTTCCACTT 168798 || | | ||||| |||||||| ||||| ||||||| || | | | | ||||| Sbjct 17866970 GGCATCCGTTGATGAATGGTTATACAATGGCAGTCCTTATGAGCTAATTGTTCTACACTT 17867029 Query 168799 CCTAATCGGAATCTCTGCCTACATGGGTAG------ACA----------GTGGGAATTAT 168842 | || | || | || ||||||| ||| ||| ||||||| | Sbjct 17867030 CTTACTTGGTGTAGCTTGTTACATGGTTAGCTTGTTACATGGGTCGTGAGTGGGAACTTA 17867089 Query 168843 CATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAG 168902 | | | || |||||| | |||||||| |||||| | |||| | | || | |||| Sbjct 17867090 ATTTCCGTCTGGGTATGCGTCCTTGGATTGTTGTTGCATGTTCAACTACTGTTGCAGCAG 17867149 Query 168903 CATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTC 168962 | ||| || ||| | | |||||| | ||||| || ||| |||||||||||||||| Sbjct 17867150 CGACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTC 17867209 Query 168963 TAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTA 169022 ||||||| ||||| || |||||||||||| | |||||||| || ||||||||||| |||| Sbjct 17867210 TAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTA 17867269 Query 169023 T 169023 | Sbjct 17867270 T 17867270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564431736383040