Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq965 239 7e-58 >seq965 Length=51047765 Score = 239 bits (264), Expect = 7e-58 Identities = 351/497 (71%), Gaps = 0/497 (0%) Strand=Plus/Plus Query 215330 TACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCAGCTACCACTTGTTTC 215389 ||| |||||||||||||||| | ||||| ||| | | | || || || || Sbjct 18211513 TACATTGGTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTT 18211572 Query 215390 ATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCT 215449 || | || || || ||||| ||||| || ||||| ||||| || | || || | | || Sbjct 18211573 ATTATCGCCTTTATTGCTGCTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGCTTCT 18211632 Query 215450 GGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCA 215509 || ||| || | ||||| || || || || ||| | || || | |||| ||| | || Sbjct 18211633 GGATCTCTACTTTATGGAAATAATATTATTTCTAGCGCGATTATTCCTACTTCTACAGCT 18211692 Query 215510 ATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAAT 215569 || || || || || ||||| || |||||||| ||| | ||||| |||||| | |||||| Sbjct 18211693 ATAGGTTTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAAT 18211752 Query 215570 GGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGA 215629 || || |||| | || || | | |||||| | |||||| | || ||| || Sbjct 18211753 GGCGGTCCTTATGAGCTAATTGTTCTACACTTCGTAATTGGTGTAGCTTGTTACATGGGT 18211812 Query 215630 AGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCC 215689 | ||||||||||| || | | |||||||| | |||||||| |||||| || | Sbjct 18211813 CGTGAGTGGGAACTTAGTTTCCGTCTAGGTATGCGTCCTTGGATTGCTGTTGCATATTTA 18211872 Query 215690 GCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTC 215749 | ||||| | || || ||| || ||| | | || ||| ||||||| || ||| Sbjct 18211873 ACTCCTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTT 18211932 Query 215750 TCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCT 215809 ||||||| |||||| || ||||||||||| || ||||||| |||| |||| ||||||||| Sbjct 18211933 TCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCT 18211992 Query 215810 GAGCACAACATTCTGAT 215826 ||||||||||| || || Sbjct 18211993 GAGCACAACATCCTTAT 18212009 Score = 203 bits (224), Expect = 5e-47 Identities = 373/549 (68%), Gaps = 16/549 (3%) Strand=Plus/Plus Query 215294 TTTTGTGAGTGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTC 215353 |||||| | ||| | ||| |||||| || || | ||| |||||||||||||||| | Sbjct 17866722 TTTTGTAACTGGATAACTAGTACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTG 17866781 Query 215354 ATGATTCCTTGCCTCCTCGCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCT 215413 ||||| ||| | | | || || | || || |||| || || ||||| ||| Sbjct 17866782 ATGATCCCTACTTTATTGACCGCAACTTATGTATTTATTATAGCCTTAATTGCTGCTCCT 17866841 Query 215414 CCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAAC 215473 || | ||||| ||||| || || || ||| |||| ||| || | ||||| || || Sbjct 17866842 CCAATAGATATTGACGGTATTCATGAACCTGTTTCTGGATCTCTACTTTATGGAAATAAT 17866901 Query 215474 ATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATC 215533 || || | |||||| || | |||| ||| || || || || || || ||||| || Sbjct 17866902 ATTATTTTTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATA 17866961 Query 215534 TGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATC 215593 |||||||| ||| | ||||| |||||| | |||||||| | |||| | || || | Sbjct 17866962 TGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCAGTCCTTATGAGCTAATTGTT 17867021 Query 215594 TTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAG------ACA----------GTG 215637 | |||||| | ||||| | || ||| | || ||| ||| Sbjct 17867022 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGTTAGCTTGTTACATGGGTCGTGAGTG 17867081 Query 215638 GGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGT 215697 ||||||| || | | | |||||| | |||||||| |||||| | || | |||| Sbjct 17867082 GGAACTTAATTTCCGTCTGGGTATGCGTCCTTGGATTGTTGTTGCATGTTCAACTACTGT 17867141 Query 215698 ATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGC 215757 | || || ||| || ||| | | || ||| ||||||| || ||| ||||||| Sbjct 17867142 TGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGG 17867201 Query 215758 TATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAA 215817 |||||| || ||||||||||| || ||||||| |||| |||| ||||||||||||||||| Sbjct 17867202 TATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAA 17867261 Query 215818 CATTCTGAT 215826 ||| || || Sbjct 17867262 CATCCTTAT 17867270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745068579699040