Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq965 264 1e-65 seq1229 95.1 1e-14 >seq965 Length=51047765 Score = 264 bits (292), Expect = 1e-65 Identities = 373/524 (71%), Gaps = 0/524 (0%) Strand=Plus/Plus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | ||| || | || |||||||||| ||||| ||||||||||| Sbjct 18211486 TGGATAACTAGCACTGAAAACTGCCTTTACATTGGTTGGTTTGGTGTTTTGATGATCCCT 18211545 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 | |||| | ||| | | ||||| | || || || || ||||| || || || Sbjct 18211546 ACTTTATTGACCGCAACTTCTGTATTTATTATCGCCTTTATTGCTGCTCCTCCAGTAGAT 18211605 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || || || || | ||||||| | || || | | ||||| || || || || ||| Sbjct 18211606 ATTGACGGTATTCGTGAACCTGCTTCTGGATCTCTACTTTATGGAAATAATATTATTTCT 18211665 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 | || || |||| |||| | || || ||| | || || || || || |||||||| Sbjct 18211666 AGCGCGATTATTCCTACTTCTACAGCTATAGGTTTGCATTTTTACCCGATATGGGAAGCG 18211725 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998 ||| | | ||||| ||||| || || || ||||||||| | || || | | |||||| Sbjct 18211726 GCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTC 18211785 Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATG 170058 | || || | || ||||||||| | |||||||||| | |||| |||||||| Sbjct 18211786 GTAATTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGTATG 18211845 Query 170059 CGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTA 170118 ||||||||||| ||| ||||||| |||| || ||||||| ||||| ||||| Sbjct 18211846 CGTCCTTGGATTGCTGTTGCATATTTAACTCCTGTTGCAGCAGCGACTGCTGTTTTCTTG 18211905 Query 170119 GTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACA 170178 | || || ||||||| ||| ||| || || || ||||||||||| ||||| ||||| Sbjct 18211906 ATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACT 18211965 Query 170179 TTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTAT 170222 || ||||||||| | |||||||| || ||||||||||| ||||| Sbjct 18211966 TTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTAT 18212009 Score = 208 bits (230), Expect = 9e-49 Identities = 369/540 (68%), Gaps = 16/540 (3%) Strand=Plus/Plus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| || || | |||||| | || |||||||||| ||||| ||||||||||| Sbjct 17866731 TGGATAACTAGTACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGATGATCCCT 17866790 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 | |||| | ||| | ||||| | || || || || ||||| || | || Sbjct 17866791 ACTTTATTGACCGCAACTTATGTATTTATTATAGCCTTAATTGCTGCTCCTCCAATAGAT 17866850 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || || || || |||||||| | || || | | ||||| || || || || | | Sbjct 17866851 ATTGACGGTATTCATGAACCTGTTTCTGGATCTCTACTTTATGGAAATAATATTATTTTT 17866910 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 ||||| || |||| |||| || || ||| | || || || || || |||||||| Sbjct 17866911 GGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGATATGGGAAGCG 17866970 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998 ||| | | ||||| ||||| || || || |||||||| | || || | | |||||| Sbjct 17866971 GCATCCGTTGATGAATGGTTATACAATGGCAGTCCTTATGAGCTAATTGTTCTACACTTC 17867030 Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAG------ACA----------GTGGGAACTATC 170042 | | || | || ||||||| ||| ||| ||||||||| Sbjct 17867031 TTACTTGGTGTAGCTTGTTACATGGTTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAA 17867090 Query 170043 ATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGC 170102 | |||| | ||||||||||||||||| ||| |||| ||| || | || ||||||| Sbjct 17867091 TTTCCGTCTGGGTATGCGTCCTTGGATTGTTGTTGCATGTTCAACTACTGTTGCAGCAGC 17867150 Query 170103 ATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCT 170162 ||||| ||||| | || || ||||||| ||| ||| || || || |||||||| Sbjct 17867151 GACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCT 17867210 Query 170163 AGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTAT 170222 ||| ||||| ||||| || ||||||||| | |||||||| || ||||||||||| ||||| Sbjct 17867211 AGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTAT 17867270 >seq1229 Length=21133251 Score = 95.1 bits (104), Expect = 1e-14 Identities = 224/331 (68%), Gaps = 22/331 (7%) Strand=Plus/Plus Query 170162 TAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAA-CATTCTT 170220 |||| || || ||||| || ||||||| | | |||||| | || |||| | | ||| ||| Sbjct 7300590 TAGGGAT-TCCGGTACTTTCAACTTCACGATTGTATTCGAGGCTGAGCTCCATCATCCTT 7300648 Query 170221 ATGCACCCATTCCA-----TATGGC--AGGGGTTGCTGGTATGTTCGGAGGAGCACTCTT 170273 |||| |||| || |||| | ||| | |||||| ||| || || || Sbjct 7300649 GTGCATTCATTGCACATGTTATGACTAAGGCTTAGCTGGTGCGTTTGGCGG-------TT 7300701 Query 170274 CTCAGCAATGCACGGTTCACTT-GTAACATCTTCTCTAATCAGAGAGACAACAGATAACG 170332 | || |||||||||| |||| ||||| ||| | | ||| | || || ||||| || | Sbjct 7300702 CCCA---ATGCACGGTT-ACTTGGTAACCTCTAGTTTGATCCGGGAAACCACAGAAAATG 7300757 Query 170333 AGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAG 170392 | || | || | |||||| ||| || | ||| ||||||| ||| | ||||| | | Sbjct 7300758 AATCTCCCAAGGAAAGATACAGATTTGGTCCAGAGAAAGAAACTTACGATATTGTATCTG 7300817 Query 170393 CACATGGATACTTTGGTAGACTTAT-CTTCCAATATGCTAGCTTTAACAATAGTCGTAGT 170451 | |||| || ||||| | | || ||||| ||||||| | || | |||| || | | Sbjct 7300818 CTCATGTTTATTTTGGCTTATTGATACTTCCGATATGCTGGTTTCAGCAATTTTCATTCT 7300877 Query 170452 CTTCACTTCTTCCTTGCTACATTCCCTGTAG 170482 | || |||||||| | | | | ||||||| Sbjct 7300878 TTACATTTCTTCCTAGATGCTTGGCCTGTAG 7300908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582837814731200