Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq965 309 3e-79 >seq965 Length=51047765 Score = 309 bits (342), Expect = 3e-79 Identities = 391/535 (73%), Gaps = 2/535 (0%) Strand=Plus/Minus Query 84423 ATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCA 84482 ||||||||||| || || |||||||| |||| |||| ||||||| || || ||||| || Sbjct 18212009 ATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCT 18211950 Query 84483 AGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGAT 84542 || ||||| |||||||| ||| ||||| |||| || || | | ||| ||||||| Sbjct 18211949 AGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTC 18211890 Query 84543 GCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATAT 84602 || |||||||| |||| | || |||||| ||||| ||||||||||| ||||| | Sbjct 18211889 GCTGCTGCAACAGGAGTTAAATATGCAACAGCAATCCAAGGACGCATACCTAGACGGAAA 18211830 Query 84603 GAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACA 84662 ||||||||| ||||||||||||||| | | ||||||| | |||||| | |||| Sbjct 18211829 CTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAATTACGAAGTGTAGAACAATT 18211770 Query 84663 AGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGA 84722 || | |||||| || ||||| |||| |||||| || | ||| |||||||| || || Sbjct 18211769 AGCTCATAAGGACCGCCATTGTATAACCATTCATCAACGGATGCCGCTTCCCATATCGGG 18211710 Query 84723 TAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTT 84782 || ||||| | ||| ||||| |||| | |||| | || | |||||| || || ||| Sbjct 18211709 TAAAAATGCAAACCTATAGCTGTAGAAGTAGGAATAATCGCGCTAGAAATAATATTATTT 18211650 Query 84783 CCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCA 84842 || || | ||||| |||| | || ||||| |||||||||||||| ||||| || ||| Sbjct 18211649 CCATAAAGTAGAGATCCAGAAGCAGGTTCACGAATACCGTCAATATCTACTGGAGGAGCA 18211590 Query 84843 CCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGT 84901 ||| || || || || || ||||| ||| || | | || ||| || ||||| | | Sbjct 18211589 GCAATAAAGGCGATAATAAATACAGA-AGTTGCGGTCAATAAAGTAGGGATCATCAAAAC 18211531 Query 84902 TCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGACCCAATCACAGAAG 84956 ||||||||||||| || | | ||| | |||| || | ||| | | ||||| Sbjct 18211530 ACCAAACCAACCAATGTAAAGGCAGTTTTCAGTGCTAGTTATCCAGTTATAGAAG 18211476 Score = 262 bits (290), Expect = 5e-65 Identities = 376/529 (71%), Gaps = 18/529 (3%) Strand=Plus/Minus Query 84423 ATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCA 84482 ||||||||||| || || |||||||| |||| |||| ||||||| || || ||||| || Sbjct 17867270 ATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCT 17867211 Query 84483 AGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGAT 84542 || ||||| |||||||| ||| ||||| |||| || || | | ||| ||||||| Sbjct 17867210 AGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTC 17867151 Query 84543 GCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATAT 84602 || |||||||| | || || | |||||| ||||| ||||||||||| ||||| | Sbjct 17867150 GCTGCTGCAACAGTAGTTGAACATGCAACAACAATCCAAGGACGCATACCCAGACGGAAA 17867091 Query 84603 GAAAGTTCCCATTCACGACCCATGT---AAGCAAA-------------TGCACCAATCAG 84646 ||||||||| ||||||||||||| |||| || | |||||| | Sbjct 17867090 TTAAGTTCCCACTCACGACCCATGTAACAAGCTAACCATGTAACAAGCTACACCAAGTAA 17867031 Query 84647 GAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGC 84706 |||||| | |||| || | |||||| | ||||| |||| |||||| || | ||| Sbjct 17867030 GAAGTGTAGAACAATTAGCTCATAAGGACTGCCATTGTATAACCATTCATCAACGGATGC 17866971 Query 84707 TGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACC 84766 |||||||| || || || ||||| | ||| ||||| ||| | |||| | ||||| Sbjct 17866970 CGCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATCGCACC 17866911 Query 84767 AGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAAT 84826 | |||| || || ||||| || | ||||| |||| || || ||| | ||||||||||| Sbjct 17866910 AAAAATAATATTATTTCCATAAAGTAGAGATCCAGAAACAGGTTCATGAATACCGTCAAT 17866851 Query 84827 ATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAGAG 84885 ||| | ||| || ||| ||| || || || || || ||| | ||| || | | || || Sbjct 17866850 ATCTATTGGAGGAGCAGCAATTAAGGCTATAATAAATACATA-AGTTGCGGTCAATAAAG 17866792 Query 84886 TTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGT 84934 | || ||||| | | ||||||||||||| || | ||||| | ||| Sbjct 17866791 TAGGGATCATCAAAACACCAAACCAACCAATGTAAAGGCGGTTTTCAGT 17866743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571263616993840