Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1229 118 1e-21 seq1030 118 1e-21 seq1103 89.7 6e-13 >seq1229 Length=21133251 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | |||||||| ||| | || | | |||||| ||||| ||| Sbjct 17548207 CCTCCTTGATCAACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGCACAATGCCA 17548266 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| | ||||| ||||| |||||||||||| | || | || || || ||| Sbjct 17548267 TTAGATGTCCCATTTGTTCCACGAATATAACTTCCTGTTGCACGAATGTTGTGAACTGAG 17548326 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| ||||| || || ||| || | ||||||| || | |||||||| ||| Sbjct 17548327 ACACCAATACCTCCAGCTGATTTGCTGATAATAGCACACTCCTTCAAAGTATCATATATT 17548386 Query 48540 CCTTCTATACTATCATCTATCAT 48562 ||||| |||||||||||| |||| Sbjct 17548387 CCTTCAATACTATCATCTTTCAT 17548409 Score = 89.7 bits (98), Expect = 6e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 ||||| | |||||| | ||| ||||||||||| |||||||| | || | || | Sbjct 17548572 GTTCCAGCATTAAAAAGTGTGGGAGATGCATGGGTAAACCATCGTTGAGACATCATATGG 17548631 Query 48660 TATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTAA 48718 ||||||| ||| ||||||| || || | ||| || || || | || || | ||| || Sbjct 17548632 TATGTTTTGATAGCAGAATCAATGTCATCCTTG-TGAATCCCAACAGCAACCCTCATCAA 17548690 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||||| ||| |||||||| |||| ||| | | ||||| || || || | |||| Sbjct 17548691 CATATGTTGGGGTCTTTCTACAACTTTTCCTTGGACCTTCAAGAGGTAGGACCTCTCCAG 17548750 Query 48779 TGTTTTAAAACCAAAATA 48796 ||||| || |||||||| Sbjct 17548751 GGTTTTGAAGCCAAAATA 17548768 >seq1030 Length=25649276 Score = 118 bits (130), Expect = 1e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 48359 ACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACC 48418 |||||| ||||| | ||| | |||||||| ||| | || | | |||||||||||| || Sbjct 17554272 ACCTCCCTGATCCACATAACGGGCAGTATCATTAAACACCCGCAGCATTGGGACAATGCC 17554331 Query 48419 ATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGA 48478 ||| ||| | || || ||||| ||||||||||||| | || | || || || ||| Sbjct 17554332 ATTGGATGTCCCGTTTGTTCCACGAATATAACTTCCAGTTGCACGAATGTTGTGAACTGA 17554391 Query 48479 AATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAAT 48538 | ||| ||||| || || ||| || | ||||||| || | || ||||| || Sbjct 17554392 GACACCAATACCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAAGTTTCATAGAT 17554451 Query 48539 TCCTTCTATACTATCATCTATCATA 48563 |||||| |||||||||||| ||||| Sbjct 17554452 TCCTTCAATACTATCATCTTTCATA 17554476 Score = 100 bits (110), Expect = 3e-16 Identities = 110/144 (76%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||| | |||||| | ||| ||||||||||| | |||||| | | || | || | Sbjct 17554602 AGTTCCAGCATTAAAAAGTGTAGGAGATGCATGGGTGAACCATCTTTGGGACATCATATG 17554661 Query 48659 ATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTA 48717 ||||||| |||| ||||||| ||||| | ||| || || || |||||||| | ||| | Sbjct 17554662 GTATGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATTCCAATAGATACCCTCATCA 17554720 Query 48718 ACATATATTGAGGTCTTTCAACAA 48741 |||||| ||||||||||| |||| Sbjct 17554721 ACATATGCTGAGGTCTTTCTACAA 17554744 >seq1103 Length=43299053 Score = 89.7 bits (98), Expect = 6e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 || |||||||| | ||||| ||||| | ||| | ||| | ||| |||||||| ||| Sbjct 38888367 CCCCCTTGATCAACATATCGAGCAGTGTCATTAAACACTTGGAGCATCGGGACAATGCCA 38888308 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || || ||||| ||||| || ||||| || || | |||||| ||| || Sbjct 38888307 TTGGAAGATCCATTTGTTCCATGGATGTAACTGCCTGAGGCACGGATATTATGAATGGAG 38888248 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || || || || ||| ||| | ||||||| || ||||||||||| || Sbjct 38888247 AGACCAATTCCTCCAGCTGATTTGCTTATGATAGCACACTTCTTCAGGGTATCATATATG 38888188 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 ||||| || || |||||| |||| || ||||| || ||| Sbjct 38888187 CCTTCAATGCTGTCATCTTTCATGCACAAAAGAAAGCAGCTA 38888146 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562098977148720