Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq965 221 4e-53 >seq965 Length=51047765 Score = 221 bits (244), Expect = 4e-53 Identities = 370/527 (70%), Gaps = 6/527 (1%) Strand=Plus/Plus Query 25811 TGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCC 25870 ||| | || || ||||| ||| | || || | || ||||| || || | ||||| ||| Sbjct 18211486 TGGATAACTAGCACTGAAAACTGCCTTTACATTGGTTGGTTTGGTGTTTTGATGAT-CCC 18211544 Query 25871 TGCTTACTCG-CAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAG 25928 | ||| | | | || ||| | ||| ||||| | ||||| || || || || || |||| Sbjct 18211545 TACTTTATTGACCGCAACTTC-TGTATTTATTATCGCCTTTATTGCTGCTCCTCCAGTAG 18211603 Query 25929 ATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATAT 25988 |||| || || || ||||| || | ||| || || || | || ||||| ||||| || | Sbjct 18211604 ATATTGACGGTATTCGTGAACCTGCTTCTGGATCTCTACTTTATGGAAATAATATTATTT 18211663 Query 25989 CAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAG 26048 | | || | | || | |||| || || || | |||||||||||||| ||||||| Sbjct 18211664 CTAGCGCGATTATTCCTACTTCTACAGCTATAGGTTTGCATTTTTACCCGATATGGGAAG 18211723 Query 26049 CTGGCA-CACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCAC 26107 | |||| | | || || ||| ||||||||||||| || ||| | || ||| | | ||| Sbjct 18211724 C-GGCATCCGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACAC 18211782 Query 26108 TTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGGA 26167 ||| |||| || ||||| || || | |||||||||| || | | ||||| Sbjct 18211783 TTCGTAATTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTAGGT 18211842 Query 26168 ATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTC 26227 ||| | || ||||| |||||||||| | | || | | ||||| || || ||| Sbjct 18211843 ATGCGTCCTTGGATTGCTGTTGCATATTTAACTCCTGTTGCAGCAGCGACTGCTGTTTTC 18211902 Query 26228 TTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGT 26287 || | || || |||| ||||| |||||| |||||| |||||||| || ||||||||| Sbjct 18211903 TTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGT 18211962 Query 26288 ACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCAT 26334 ||||| ||||| ||| | |||||||| || || || || || || || Sbjct 18211963 ACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTAT 18212009 Score = 203 bits (224), Expect = 1e-47 Identities = 385/557 (69%), Gaps = 26/557 (5%) Strand=Plus/Plus Query 25799 AGGTTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTG 25858 || |||||| | ||| | || |||||||| ||||| || || | || ||||| || || Sbjct 17866719 AGCTTTTGTAACTGGATAACTAGTACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTT 17866778 Query 25859 CTTATGATACCCTGCTTACTCG-CAGCCACTACATGT-TTTATACTTGCCTTCATCGCAG 25916 | ||||| |||| ||| | | | || ||| |||| ||||| | ||||| || || | Sbjct 17866779 TTGATGAT-CCCTACTTTATTGACCGCAACTT-ATGTATTTATTATAGCCTTAATTGCTG 17866836 Query 25917 CACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAA 25976 | || || ||||||| || || || | ||| || ||||| || || || | || |||| Sbjct 17866837 CTCCTCCAATAGATATTGACGGTATTCATGAACCTGTTTCTGGATCTCTACTTTATGGAA 17866896 Query 25977 ACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACC 26036 | ||||| || | || || | | || | ||| || || || | |||||||||| Sbjct 17866897 ATAATATTATTTTTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACC 17866956 Query 26037 CGATCTGGGAAGCTGGCA-CACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTC 26095 |||| |||||||| |||| | | || || ||| ||||||||||| | || ||| | || Sbjct 17866957 CGATATGGGAAGC-GGCATCCGTTGATGAATGGTTATACAATGGCAGTCCTTATGAGCTA 17867015 Query 26096 ATTATCTTCCACTTCTTAATAGGAGTAGC-------------AGCAT-ATGCA--GGGAG 26139 ||| | | ||||||||| | || ||||| ||| | | || || | Sbjct 17867016 ATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGTTAGCTTGTTACATGGGTCG 17867075 Query 26140 ACAGTGGGAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGC 26199 |||||||||| || | | || || ||| | || ||||| ||||||||| | || Sbjct 17867076 TGAGTGGGAACTTAATTTCCGTCTGGGTATGCGTCCTTGGATTGTTGTTGCATGTTCA-- 17867133 Query 26200 ACCACTAT--CCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTT 26257 || ||| | | ||||| || || ||||| | || || |||| ||||| |||||| Sbjct 17867134 ACTACTGTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTT 17867193 Query 26258 AGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCA 26317 |||||| |||||||| || |||||||||||||| ||||| ||| | |||||||| || Sbjct 17867194 TCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCT 17867253 Query 26318 GAACATAATATACTCAT 26334 || || || || || || Sbjct 17867254 GAGCACAACATCCTTAT 17867270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146723964158352