Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq965 309 9e-80 >seq965 Length=51047765 Score = 309 bits (342), Expect = 9e-80 Identities = 384/526 (73%), Gaps = 0/526 (0%) Strand=Plus/Minus Query 36423 ATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCA 36482 |||||||| ||||| || ||||| || |||| ||| || |||||||| || || || || Sbjct 18212009 ATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCT 18211950 Query 36483 AGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAAT 36542 ||||||||||||||||| ||||| ||||| || | ||||||| ||||| |||||| Sbjct 18211949 AGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTC 18211890 Query 36543 GCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAA 36602 |||||||||||||| | | |||| || ||| ||||| || | ||||||||| | || Sbjct 18211889 GCTGCTGCAACAGGAGTTAAATATGCAACAGCAATCCAAGGACGCATACCTAGACGGAAA 18211830 Query 36603 CTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATG 36662 ||||||||||| | || |||| |||| | | |||||| | ||||| | ||||| Sbjct 18211829 CTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAATTACGAAGTGTAGAACAATT 18211770 Query 36663 AGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGG 36722 || | ||| || || || || |||||||| || || | || ||| |||||||| || ||| Sbjct 18211769 AGCTCATAAGGACCGCCATTGTATAACCATTCATCAACGGATGCCGCTTCCCATATCGGG 18211710 Query 36723 TAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTT 36782 || || || | ||| || || | || | || | || || | ||| || || || ||| Sbjct 18211709 TAAAAATGCAAACCTATAGCTGTAGAAGTAGGAATAATCGCGCTAGAAATAATATTATTT 18211650 Query 36783 CCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCA 36842 ||||| |||| | ||| || |||| ||||||||||| || ||||| || ||||| ||| Sbjct 18211649 CCATAAAGTAGAGATCCAGAAGCAGGTTCACGAATACCGTCAATATCTACTGGAGGAGCA 18211590 Query 36843 GCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACC 36902 |||| ||| || || | |||| | | ||| || || | | ||||||||| | || Sbjct 18211589 GCAATAAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACA 18211530 Query 36903 CCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGT 36948 |||||||| || | || |||| ||| | || || || | ||||| Sbjct 18211529 CCAAACCAACCAATGTAAAGGCAGTTTTCAGTGCTAGTTATCCAGT 18211484 Score = 257 bits (284), Expect = 5e-64 Identities = 387/552 (70%), Gaps = 16/552 (3%) Strand=Plus/Minus Query 36423 ATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCA 36482 |||||||| ||||| || ||||| || |||| ||| || |||||||| || || || || Sbjct 17867270 ATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCT 17867211 Query 36483 AGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAAT 36542 ||||||||||||||||| ||||| ||||| || | ||||||| ||||| |||||| Sbjct 17867210 AGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTC 17867151 Query 36543 GCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAA 36602 ||||||||||||| | |||| | || ||| ||||| || | |||||| || | || Sbjct 17867150 GCTGCTGCAACAGTAGTTGAACATGCAACAACAATCCAAGGACGCATACCCAGACGGAAA 17867091 Query 36603 CTAAGTTCCCATTGTCGTCCCAAGT---AAGCT-------------GAGATACCAATGAG 36646 |||||||||| | || |||| || ||||| | | ||||| | Sbjct 17867090 TTAAGTTCCCACTCACGACCCATGTAACAAGCTAACCATGTAACAAGCTACACCAAGTAA 17867031 Query 36647 AAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGC 36706 ||||| | ||||| || | ||| || | || || |||||||| || || | || ||| Sbjct 17867030 GAAGTGTAGAACAATTAGCTCATAAGGACTGCCATTGTATAACCATTCATCAACGGATGC 17866971 Query 36707 AGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCC 36766 |||||||| || ||||| || || | ||| || || || | || | || || || Sbjct 17866970 CGCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATCGCACC 17866911 Query 36767 AGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTAT 36826 | | || || || |||||||| |||| | ||| || ||||| ||| ||||||| || || Sbjct 17866910 AAAAATAATATTATTTCCATAAAGTAGAGATCCAGAAACAGGTTCATGAATACCGTCAAT 17866851 Query 36827 ATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGC 36886 ||| | ||||| ||||||| || || || | |||| | ||| || || | | Sbjct 17866850 ATCTATTGGAGGAGCAGCAATTAAGGCTATAATAAATACATAAGTTGCGGTCAATAAAGT 17866791 Query 36887 AGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCA 36946 ||||||||| | || |||||||| || | || |||||||| | ||||| || | ||| Sbjct 17866790 AGGGATCATCAAAACACCAAACCAACCAATGTAAAGGCGGTTTTCAGTACTAGTTATCCA 17866731 Query 36947 GTCACATAAACT 36958 || ||| || || Sbjct 17866730 GTTACAAAAGCT 17866719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150451902268892