Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq965 309 9e-80 >seq965 Length=51047765 Score = 309 bits (342), Expect = 9e-80 Identities = 393/536 (73%), Gaps = 6/536 (1%) Strand=Plus/Minus Query 5645 ATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCA 5704 |||||||| ||||| || ||||||||||| | ||| ||||| |||||||||||||| || Sbjct 18212009 ATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCT 18211950 Query 5705 AGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTA 5763 ||||||||||||||| |||||||| || |||| ||||| | || || || | ||| Sbjct 18211949 AGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTC 18211890 Query 5764 GGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTA 5823 | |||| ||||| || | | ||||||| || |||||| || ||||| |||| | | | Sbjct 18211889 G-CTGCTGCAACAGGAGTTAAATATGCAACAGCAATCCAAGGACGCATACCTAGACGGAA 18211831 Query 5824 ACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGAC 5883 |||||||||||| | || |||| |||| || | |||||| | |||||| | || | Sbjct 18211830 ACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAATTACGAAGTGTAGAACAAT 18211771 Query 5884 GAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGA--GATTGGCTGCTTCCCAGATG 5941 || | || || || |||||||| | ||||||||| | ||| || |||||||| || Sbjct 18211770 TAGCTCATAAGGACCGCCATTGTATAACCATTCATCAACGGAT--GCCGCTTCCCATATC 18211713 Query 5942 GGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTG 6001 || || || || || || || || | || | || | || || | || || || || Sbjct 18211712 GGGTAAAAATGCAAACCTATAGCTGTAGAAGTAGGAATAATCGCGCTAGAAATAATATTA 18211653 Query 6002 TTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGT 6061 |||||||| ||||||||||| | | |||||||| || ||||| || || ||||| || Sbjct 18211652 TTTCCATAAAGTAGAGATCCAGAAGCAGGTTCACGAATACCGTCAATATCTACTGGAGGA 18211593 Query 6062 GCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAG 6121 ||||| | || || | |||||| ||| ||||||||| || | | || ||||| || Sbjct 18211592 GCAGCAATAAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAA 18211533 Query 6122 ACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 ||||||||||| || | || |||| ||| | |||||||| | ||||| | |||| Sbjct 18211532 ACACCAAACCAACCAATGTAAAGGCAGTTTTCAGTGCTAGTTATCCAGTTATAGAA 18211477 Score = 253 bits (280), Expect = 6e-63 Identities = 389/552 (70%), Gaps = 22/552 (4%) Strand=Plus/Minus Query 5645 ATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCA 5704 |||||||| ||||| || ||||||||||| | ||| ||||| |||||||||||||| || Sbjct 17867270 ATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCT 17867211 Query 5705 AGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTA 5763 ||||||||||||||| |||||||| || |||| ||||| | || || || | ||| Sbjct 17867210 AGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGT- 17867152 Query 5764 GGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTA 5823 ||||| ||||| | | |||| |||| || |||||| || ||||| || | | | | Sbjct 17867151 CGCTGCTGCAACAGTAGTTGAACATGCAACAACAATCCAAGGACGCATACCCAGACGGAA 17867092 Query 5824 ACTAAGTTCCCATTGGCGTCCCAAGT---AAGCT-------------GCGATACCAATAA 5867 | |||||||||| | || |||| || ||||| || | ||||| | Sbjct 17867091 ATTAAGTTCCCACTCACGACCCATGTAACAAGCTAACCATGTAACAAGCTACACCAAGTA 17867032 Query 5868 GGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGA--GATT 5925 |||||| | || | || | || || | |||||||| | ||||||||| | ||| Sbjct 17867031 AGAAGTGTAGAACAATTAGCTCATAAGGACTGCCATTGTATAACCATTCATCAACGGAT- 17866973 Query 5926 GGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGC 5985 || |||||||| || || || || || || || || || || | || | || || Sbjct 17866972 -GCCGCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATCGC 17866914 Query 5986 TCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTC 6045 || | || || || |||||||| ||||||||||| | || |||||| | || ||||| Sbjct 17866913 ACCAAAAATAATATTATTTCCATAAAGTAGAGATCCAGAAACAGGTTCATGAATACCGTC 17866854 Query 6046 GATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAG 6105 || || | ||| || ||||| | || |||| |||||| || ||||||||| || | Sbjct 17866853 AATATCTATTGGAGGAGCAGCAATTAAGGCTATAATAAATACATAAGTTGCGGTCAATAA 17866794 Query 6106 TGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAAC 6165 | || ||||| || ||||||||||| || | || |||||||| | || ||||| | Sbjct 17866793 AGTAGGGATCATCAAAACACCAAACCAACCAATGTAAAGGCGGTTTTCAGTACTAGTTAT 17866734 Query 6166 CCAGTCACAGAA 6177 ||||| ||| || Sbjct 17866733 CCAGTTACAAAA 17866722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152647065825828