Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq965 291 2e-74 >seq965 Length=51047765 Score = 291 bits (322), Expect = 2e-74 Identities = 380/526 (72%), Gaps = 0/526 (0%) Strand=Plus/Minus Query 25903 ATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCA 25962 |||||||| ||||| || ||||| || |||| ||| || |||||||| || || || || Sbjct 18212009 ATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCT 18211950 Query 25963 AGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAAT 26022 ||||||||||||||||| ||||| ||||| || | ||||||| ||||| |||||| Sbjct 18211949 AGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTC 18211890 Query 26023 GCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAA 26082 |||||||||||||| | | |||| || ||| ||||| || | ||| ||||| | || Sbjct 18211889 GCTGCTGCAACAGGAGTTAAATATGCAACAGCAATCCAAGGACGCATACCTAGACGGAAA 18211830 Query 26083 CTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATA 26142 ||||||||||| | || |||| |||| | | || || | ||||| | ||||| Sbjct 18211829 CTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAATTACGAAGTGTAGAACAATT 18211770 Query 26143 AGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGG 26202 || | ||| || || || || || ||||| || || | || ||| |||||||| || ||| Sbjct 18211769 AGCTCATAAGGACCGCCATTGTATAACCATTCATCAACGGATGCCGCTTCCCATATCGGG 18211710 Query 26203 TAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTT 26262 || || || | ||| || || |||| | || | || || | || || || || ||| Sbjct 18211709 TAAAAATGCAAACCTATAGCTGTAGAAGTAGGAATAATCGCGCTAGAAATAATATTATTT 18211650 Query 26263 CCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCA 26322 ||||| |||| | ||| || |||| ||||||||||| || ||||| || ||||| ||| Sbjct 18211649 CCATAAAGTAGAGATCCAGAAGCAGGTTCACGAATACCGTCAATATCTACTGGAGGAGCA 18211590 Query 26323 GCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACC 26382 |||| ||| || || | |||| | | ||| || || | | ||||||||| | || Sbjct 18211589 GCAATAAAGGCGATAATAAATACAGAAGTTGCGGTCAATAAAGTAGGGATCATCAAAACA 18211530 Query 26383 CCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGT 26428 |||||||| || | || |||| ||| | || || || | ||||| Sbjct 18211529 CCAAACCAACCAATGTAAAGGCAGTTTTCAGTGCTAGTTATCCAGT 18211484 Score = 244 bits (270), Expect = 3e-60 Identities = 385/552 (70%), Gaps = 16/552 (3%) Strand=Plus/Minus Query 25903 ATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCA 25962 |||||||| ||||| || ||||| || |||| ||| || |||||||| || || || || Sbjct 17867270 ATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAGATTCCT 17867211 Query 25963 AGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAAT 26022 ||||||||||||||||| ||||| ||||| || | ||||||| ||||| |||||| Sbjct 17867210 AGAGGCATACCATCAGAAAAACTTCCTTGACCGATTGGGTAGATCAAGAAAACAGCAGTC 17867151 Query 26023 GCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAA 26082 ||||||||||||| | |||| | || ||| ||||| || | ||| || || | || Sbjct 17867150 GCTGCTGCAACAGTAGTTGAACATGCAACAACAATCCAAGGACGCATACCCAGACGGAAA 17867091 Query 26083 CTAAGTTCCCATTGTCGTCCCAAGT---AAGCTGA-GATG------------CCGATGAG 26126 |||||||||| | || |||| || ||||| | ||| || | | Sbjct 17867090 TTAAGTTCCCACTCACGACCCATGTAACAAGCTAACCATGTAACAAGCTACACCAAGTAA 17867031 Query 26127 AAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGC 26186 ||||| | ||||| || | ||| || | || || || ||||| || || | || ||| Sbjct 17867030 GAAGTGTAGAACAATTAGCTCATAAGGACTGCCATTGTATAACCATTCATCAACGGATGC 17866971 Query 26187 AGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCC 26246 |||||||| || ||||| || || | ||| || || ||| | || | || || || Sbjct 17866970 CGCTTCCCATATCGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATCGCACC 17866911 Query 26247 TGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTAT 26306 | || || || |||||||| |||| | ||| || ||||| ||| ||||||| || || Sbjct 17866910 AAAAATAATATTATTTCCATAAAGTAGAGATCCAGAAACAGGTTCATGAATACCGTCAAT 17866851 Query 26307 ATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGC 26366 ||| | ||||| ||||||| || || || | |||| | ||| || || | | Sbjct 17866850 ATCTATTGGAGGAGCAGCAATTAAGGCTATAATAAATACATAAGTTGCGGTCAATAAAGT 17866791 Query 26367 AGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCA 26426 ||||||||| | || |||||||| || | || |||||||| | ||||| || | ||| Sbjct 17866790 AGGGATCATCAAAACACCAAACCAACCAATGTAAAGGCGGTTTTCAGTACTAGTTATCCA 17866731 Query 26427 GTCACATAAACT 26438 || ||| || || Sbjct 17866730 GTTACAAAAGCT 17866719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151991076716248