Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1165 109 4e-19 seq1 104 2e-17 seq1103 95.1 9e-15 seq965 87.8 1e-12 >seq1165 Length=25613772 Score = 109 bits (120), Expect = 4e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||| | ||| || ||| ||| || ||||| || ||||||| || | | || Sbjct 10817571 AGGCGGAGCACAAGATGGAGGGTGGACTCCTTCTGAATGTTATAATCAGCTAAAGTACGG 10817512 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || ||||| || || | ||| ||||| | |||| || ||| Sbjct 10817511 CCATCCTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCC 10817452 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||||| || ||| | | | || ||||| ||||||||||| ||| Sbjct 10817451 TTGTCCTGAATCTTTGCCTTAACATTATCAATAGTATCTGAGCTCTCCACCTCCAGAGTA 10817392 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || ||||| || || ||||| |||||||| Sbjct 10817391 ATAGTCTTCCCAGTCAAGGTCTTGACAAATATCTGCAT 10817354 Score = 102 bits (112), Expect = 6e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| ||| || ||||| |||||||||| ||| | || |||| || | ||| Sbjct 12024818 ATGGAGGGTGGACTCCTTCTGAATGTTGTAATCAGCCAGAGTACGCCCGTCCTCAAGCTG 12024759 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTTGTCGCTAATCT 48681 ||| || || || || || | ||| ||||| | ||||| | || |||||||| ||||| Sbjct 12024758 CTTCCCAGCGAAGATGAGCCTCTGCTGATCAGGTGGGATC-CCTTCCTTGTCCTGAATCT 12024700 Query 48682 TTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCG 48741 | ||| ||| | | | || || ||| ||||||| |||||||| || || | Sbjct 12024699 TGGCTTTGACATTGTCAATGGTATCAGAACTCTCTACCTCCAGGGTAATCGTCTTCCCGG 12024640 Query 48742 TCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || || |||||||||||||| Sbjct 12024639 TCAATGTCTTAACAAAAATCTGCAT 12024615 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| ||| ||||| || || ||||||| || | || |||| || | ||| Sbjct 10928775 ATGGAGGGTGGACTCCTTTTGGATGTTATAATCAGCAAGGGTACGGCCGTCCTCTAGCTG 10928716 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| || || || || || | ||| ||||| | |||| || |||||||| |||||| Sbjct 10928715 CTTCCCAGCGAAGATGAGCCTCTGCTGATCTGGTGGAATCCCTTCCTTGTCCTGAATCTT 10928656 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 | || ||| | | | | || || ||||||||||| ||||| || || || || Sbjct 10928655 TGCCTTGACATTATCAATTGTATCAGAACTCTCCACCTCCAGAGTAATAGTCTTCCCAGT 10928596 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 |||||| || |||||||| ||||| Sbjct 10928595 CAAAGTCTTGACAAAAATTTGCAT 10928572 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| ||| |||||||| || ||||||| || | | || | || || | ||| Sbjct 10936556 ATGGAGGGTGGACTCCTTTTGAATGTTATAATCAGCTAAATTACGGCCATCCTCAAGCTG 10936497 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| || ||||| || || | ||| ||||| | |||| || ||||| || |||||| Sbjct 10936496 CTTCCCAGCAAAGATGAGCCTCTGCTGATCAGGTGGAATCCCTTCCTTATCCTGAATCTT 10936437 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 || ||| | | | || || ||||||||||| ||||| ||||| || || Sbjct 10936436 AGCCTTGACATTGTCAATGGTATCAGAACTCTCCACCTCCAGGGTAATTGTTTTCCCAGT 10936377 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 | ||| || || ||||||||||| Sbjct 10936376 AAGAGTCTTGACGAAAATCTGCAT 10936353 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || ||||||||||||| | | || |||| |||| ||||| || ||||| Sbjct 10816861 CTCCTTCTGGATATTGTAATCAGCCAAGGTGCGGCCGTCTTCCAGTTGCTTGCCAGCAAA 10816802 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||||| | ||| || |||| ||| | ||||||||||| |||||| || || Sbjct 10816801 GATCAGCCTCTGCTGGTCCGGGGGGATTCCCTCCTTGTCTTGAATCTTCGCCTTAACGTT 10816742 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | ||||| ||| ||||| | || ||||| || || || | ||||| || Sbjct 10816741 ATCGATCGTGTCTGAGCTCTCAACCTCGAGGGTTATCGTCTTCCCGGTTAGGGTTTTGAC 10816682 Query 48755 AAAAATCTGCAT 48766 ||| |||||||| Sbjct 10816681 AAAGATCTGCAT 10816670 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| || ||||| || || ||||||| || | || | || || | ||| Sbjct 10868662 ATGGAGGGTGGATTCCTTTTGGATGTTATAATCAGCAAGGGTACGGCCATCCTCAAGCTG 10868603 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| || || || || || | ||| ||||| | |||| || ||||| || |||||| Sbjct 10868602 CTTCCCAGCGAAGATAAGCCTCTGCTGATCGGGTGGAATCCCTTCCTTATCCTGAATCTT 10868543 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 | || ||| | | | | || || ||||||||||| ||||| || || || || Sbjct 10868542 TGCCTTGACATTATCAATTGTATCAGAACTCTCCACCTCCAGAGTAATAGTCTTCCCAGT 10868483 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 |||||| || |||||||| ||||| Sbjct 10868482 CAAAGTCTTGACAAAAATTTGCAT 10868459 >seq1 Length=28940139 Score = 104 bits (114), Expect = 2e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 9075 GATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTC 9134 ||||| ||| |||||||||||||| || || ||| | ||||| |||| || || Sbjct 23086559 GATTTTCTCAATTATTAATTGAGCAATTCTATCACCCCTTTTCACCTCAAAATCAACATC 23086500 Query 9135 GGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGC 9194 |||||||| |||| | ||| || || ||||||||||||| |||| ||||| || || Sbjct 23086499 AGAATGATTAAACAAAATCACCCCAACAGGACCCCTGTAATCCGCATCAATCACCCCGGC 23086440 Query 9195 ACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGC 9239 |||||||| || ||||||| ||| ||||| || | ||||| Sbjct 23086439 TCCCACGTCCATTGAGTGCTTCCACGCCAGTCCTGATCTCGGCGC 23086395 Score = 98.7 bits (108), Expect = 8e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || |||||||| |||| | | | || | || |||| |||||| |||||||| Sbjct 21034055 CTCCTTCTGGATATTGTAGTCAGCCAAAGTACGCCCATCCTCCAGCTGCTTCCCGGCAAA 21033996 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| | ||| ||||| | |||| || |||||||| || || || ||| Sbjct 21033995 AATCAACCTCTGCTGATCTGGAGGAATCCCTTCCTTGTCCTGGATTTTAGCCTTCACATT 21033936 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | ||||| ||| ||||||| ||||| |||||||||||||| || || || Sbjct 21033935 ATCAATGGTGTCTGAACTCTCAACCTCCAGGGTAATGGTTTTTCCCGTCAATGTCTTCAC 21033876 Query 48755 AAAAATCTGCAT 48766 ||||||||||| Sbjct 21033875 GAAAATCTGCAT 21033864 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 |||||||||||| || ||| || || ||||| |||||||| | || | | | || Sbjct 21033848 CAACACCAAATGCAGTGTGGATTCCTTCTGAATGTTGTAATCTGCAAGGGTCCTCCCATC 21033789 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 || | |||||| || ||||| |||| | ||| || || | |||| ||||||||| || Sbjct 21033788 TTCAAGCTGCTTGCCTGCAAAAATCAACCTCTGCTGGTCTGGTGGAATGCCCTCCTTATC 21033729 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| || ||| | | | || || || ||| ||||||| || || || Sbjct 21033728 TTGGATCTTGGCCTTCACATTATCAATAGTGTCCGAACTCTCTACCTCCAGAGTGATTGT 21033669 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||| || | ||| || |||||||| ||||| Sbjct 21033668 TTTTCCAGTGAGAGTCTTCACAAAAATTTGCAT 21033636 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || ||| || || || ||||| |||| |||| | || Sbjct 21029646 AGACGGAGCACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCTAGAGTACGG 21029587 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | || || || ||||| |||| || ||| ||||| | || | ||||||| Sbjct 21029586 CCATCTTCAAGTTGTTTGCCAGCAAAGATCAATCTCTGCTGATCGGGAGGGATGCCCTCC 21029527 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | || || || ||||||| || Sbjct 21029526 TTGTCCTGAATCTTAGCCTTGACATTGTCGATTGTGTCAGAGCTTTCAACCTCCAAAGTT 21029467 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || |||| ||||| |||||||||||||| Sbjct 21029466 ATAGTTTTACCAGTCAGGGTTTTCACAAAAATCTGCAT 21029429 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||| || || || || ||||||| || | ||| | || || Sbjct 20996013 ACCAAGTGGAGGGTTGACTCCTTCTGGATGTTATAATCAGCAAGTGTGCGACCATCCTCG 20995954 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATC-CGTGGGAACGCCCTCCTTGTCGCT 48676 | ||| ||||||||||| || || | |||||| || |||||| | || |||||||| Sbjct 20995953 AGCTGTTTACCGGCAAAGATAAGCCTCTGTTGGTCTGGTGGGATC-CCTTCCTTGTCTTG 20995895 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 |||||| ||| ||| | | | || || |||||||| | |||||||| || Sbjct 20995894 AATCTTGGCTTTCACATTGTCAATGGTGTCGGAGCTTTCCACCTCAAGAGTAATCGTCTT 20995835 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | || |||||||| |||||||| Sbjct 20995834 GCCAGTGAGGGTCTTTACAAAGATCTGCAT 20995805 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||||||| || || ||| || || || ||||| |||| ||| | ||| Sbjct 20996478 AGACGAAGCACCAAATGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGCAAGAGTACGA 20996419 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | || || |||||||| || | | ||||||||| | || | ||||||| Sbjct 20996418 CCATCTTCAAGTTGTTTGCCGGCAAAGATTAACCTCTGTTGATCAGGTGGGATGCCCTCC 20996359 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || || ||||||| || Sbjct 20996358 TTGTCCTGTATCTTGGCCTTGACATTGTCGATCGTGTCAGAGCTTTCAACCTCCAAAGTT 20996299 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || |||| ||||| |||||||||||||| Sbjct 20996298 ATAGTCTTACCAGTCAGGGTTTTCACAAAAATCTGCAT 20996261 Score = 82.4 bits (90), Expect = 6e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || || || ||||| ||||| |||| || | || Sbjct 21033169 AGGCGAAGCACCAAGTGAAGGGTAGATTCCTTCTGAATGTTGTAGTCAGCAAGGGTACGG 21033110 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || || | |||||| || ||||| ||||||| ||| ||||| | || | |||||| Sbjct 21033109 CCATCTTCTAGCTGCTTTCCAGCAAAAATCAGTCTCTGCTGATCAGGAGGGATTCCCTCC 21033050 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | || || ||| || |||| || Sbjct 21033049 TTGTCCTGAATCTTAGCCTTGACATTGTCGATTGTATCAGAACTCTCAACTTCCAAGGTG 21032990 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || |||| ||||| ||||| |||||||| Sbjct 21032989 ATAGTTTTACCAGTCAGGGTTTTCACAAATATCTGCAT 21032952 >seq1103 Length=43299053 Score = 95.1 bits (104), Expect = 9e-15 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 9075 GATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTC 9134 ||||| ||| |||||||||||||| || || ||| ||||| |||| || || Sbjct 40969393 GATTTTCTCAATTATTAATTGAGCAATTCTATCACCCACTTTCACCTCAAAATCAACATC 40969334 Query 9135 GGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGC 9194 |||||||| |||| | ||| || || |||||||||||| |||| ||||| || || Sbjct 40969333 AGAATGATTAAACAAAATCACCCCAACAGGGCCCCTGTAATCCGCATCAATCACCCCGGC 40969274 Query 9195 ACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGC 9239 |||||||| || ||||||| ||| ||||| || | ||||| Sbjct 40969273 TCCCACGTCCATTGAGTGCTTCCACGCCAGTCCCGATCTTGGCGC 40969229 >seq965 Length=51047765 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 ||||| | ||||| || || || ||| || || |||||||| || | | |||| Sbjct 46933590 AGCCGAAGCACCAGGTGCAGAGTCGACTCCTTCTGGATATTGTAGTCGGCCAAGGTTCGC 46933531 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| || | |||||| ||||| || || || ||||| || |||| || | |||||| Sbjct 46933530 CCGTCTTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGTGGGATACCCTCC 46933471 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || || | | | || || | ||||||||||| ||| Sbjct 46933470 TTGTCCTGGATCTTCGCCTTGACGTTGTCGATTGTGTCGGAGGACTCCACCTCCAACGTT 46933411 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTGT 48771 || || || ||||| | ||||| || || ||||||||| ||| Sbjct 46933410 ATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCTTGT 46933368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380931109537554