Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq1113 86.0 1e-11 seq1074 86.0 1e-11 seq201 86.0 1e-11 >seq1113 Length=8127 Score = 86.0 bits (94), Expect = 1e-11 Identities = 66/78 (85%), Gaps = 3/78 (4%) Strand=Plus/Minus Query 324417 ATTGCGGAGTAGAGCAGTCTGGTAGCTTGCAAGGCTCATAACCTTGAGGTCGTGTTTGGT 324476 || |||| |||||||||| |||||||| ||||||||||||||||||||||| | ||| Sbjct 6018 ATCGCGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACG---GGT 5962 Query 324477 TCGAATCCCACCTCCGCA 324494 || |||||| ||||||| Sbjct 5961 TCAAATCCCGTCTCCGCA 5944 >seq1074 Length=10062 Score = 86.0 bits (94), Expect = 1e-11 Identities = 66/78 (85%), Gaps = 3/78 (4%) Strand=Plus/Plus Query 324417 ATTGCGGAGTAGAGCAGTCTGGTAGCTTGCAAGGCTCATAACCTTGAGGTCGTGTTTGGT 324476 || |||| |||||||||| |||||||| ||||||||||||||||||||||| | ||| Sbjct 607 ATCGCGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACG---GGT 663 Query 324477 TCGAATCCCACCTCCGCA 324494 || |||||| ||||||| Sbjct 664 TCAAATCCCGTCTCCGCA 681 >seq201 Length=4246 Score = 86.0 bits (94), Expect = 1e-11 Identities = 66/78 (85%), Gaps = 3/78 (4%) Strand=Plus/Minus Query 324417 ATTGCGGAGTAGAGCAGTCTGGTAGCTTGCAAGGCTCATAACCTTGAGGTCGTGTTTGGT 324476 || |||| |||||||||| |||||||| ||||||||||||||||||||||| | ||| Sbjct 2261 ATCGCGGGGTAGAGCAGTTTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACG---GGT 2205 Query 324477 TCGAATCCCACCTCCGCA 324494 || |||||| ||||||| Sbjct 2204 TCAAATCCCGTCTCCGCA 2187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147569844504204