Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq965 268 1e-66 >seq965 Length=51047765 Score = 268 bits (296), Expect = 1e-66 Identities = 354/491 (72%), Gaps = 0/491 (0%) Strand=Plus/Plus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600 |||||||| ||||| |||||||||||| || | | ||| | || || || || Sbjct 18211519 GGTTGGTTTGGTGTTTTGATGATCCCTACTTTATTGACCGCAACTTCTGTATTTATTATC 18211578 Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660 || || ||||| || |||||||| ||||| || ||||| | ||||||| | | || || Sbjct 18211579 GCCTTTATTGCTGCTCCTCCAGTAGATATTGACGGTATTCGTGAACCTGCTTCTGGATCT 18211638 Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720 || || ||||| || || || || ||| | || | |||||| ||| | ||||| ||| Sbjct 18211639 CTACTTTATGGAAATAATATTATTTCTAGCGCGATTATTCCTACTTCTACAGCTATAGGT 18211698 Query 162721 CTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGA 162780 | || || || || || |||||||| ||| | ||||||| ||||| || ||||| || Sbjct 18211699 TTGCATTTTTACCCGATATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCGGT 18211758 Query 162781 CCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAG 162840 |||| | || | || | |||||| | || || | | ||| |||||| || Sbjct 18211759 CCTTATGAGCTAATTGTTCTACACTTCGTAATTGGTGTAGCTTGTTACATGGGTCGTGAG 18211818 Query 162841 TGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA 162900 ||||||||| || ||| ||||||||||||||||||| ||||||||| | | || Sbjct 18211819 TGGGAACTTAGTTTCCGTCTAGGTATGCGTCCTTGGATTGCTGTTGCATATTTAACTCCT 18211878 Query 162901 GTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGAC 162960 || | ||||| ||||| |||||| |||| || |||||||||| ||| ||||| Sbjct 18211879 GTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGAT 18211938 Query 162961 GCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCAC 163020 | |||||||| || || ||||||||||| |||| |||| | || ||||| || |||||| Sbjct 18211939 GGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCAC 18211998 Query 163021 AACATCCTAAT 163031 |||||||| || Sbjct 18211999 AACATCCTTAT 18212009 Score = 224 bits (248), Expect = 1e-53 Identities = 382/551 (69%), Gaps = 26/551 (5%) Strand=Plus/Plus Query 162502 TGTAACTGGGTCACCTCAGT--TGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGA 162559 ||||||||| | || ||| ||| || ||| | || | |||||||| ||||| |||| Sbjct 17866725 TGTAACTGGATAACT--AGTACTGAAAACCGCCTTTACATTGGTTGGTTTGGTGTTTTGA 17866782 Query 162560 TGATCCCTTGCTTGCTCGCAGCAGCAACTTGC---TTCATCATTGCATTCATTGCAGCAC 162616 |||||||| ||| | | | ||||||| || || || || || ||||| || | Sbjct 17866783 TGATCCCTA-CTTTATTGA--CCGCAACTTATGTATTTATTATAGCCTTAATTGCTGCTC 17866839 Query 162617 CTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACA 162676 ||||| | ||||| || ||||| ||||||||| | || || || || ||||| || | Sbjct 17866840 CTCCAATAGATATTGACGGTATTCATGAACCTGTTTCTGGATCTCTACTTTATGGAAATA 17866899 Query 162677 ACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTA 162736 | || || | |||||| | |||||| ||| ||||| ||| | || || || || | Sbjct 17866900 ATATTATTTTTGGTGCGATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCGA 17866959 Query 162737 TCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAG 162796 | |||||||| ||| | ||||||| ||||| || ||||| | |||| | || | | Sbjct 17866960 TATGGGAAGCGGCATCCGTTGATGAATGGTTATACAATGGCAGTCCTTATGAGCTAATTG 17867019 Query 162797 TCTTCCACTTCCTTATCGGAATCACAGCATAC----------TGT------GGTCGTCAG 162840 | | |||||| | | || | | ||| ||| |||||| || Sbjct 17867020 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGTTAGCTTGTTACATGGGTCGTGAG 17867079 Query 162841 TGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA 162900 ||||||||| || ||| | ||||||||||||||||| |||||||| || | | Sbjct 17867080 TGGGAACTTAATTTCCGTCTGGGTATGCGTCCTTGGATTGTTGTTGCATGTTCAACTACT 17867139 Query 162901 GTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGAC 162960 || | ||||| ||||| |||||| |||| || |||||||||| ||| ||||| Sbjct 17867140 GTTGCAGCAGCGACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCTGAT 17867199 Query 162961 GCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCAC 163020 | |||||||| || || ||||||||||| |||| |||| | || ||||| || |||||| Sbjct 17867200 GGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCAC 17867259 Query 163021 AACATCCTAAT 163031 |||||||| || Sbjct 17867260 AACATCCTTAT 17867270 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553075134843120