Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq1229 109 1e-18 seq1030 104 4e-17 >seq1229 Length=21133251 Score = 109 bits (120), Expect = 1e-18 Identities = 423/659 (64%), Gaps = 18/659 (3%) Strand=Plus/Minus Query 48041 AACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGCTTAACGCGGGACTCTGAGGGT 48100 |||||| ||||||||| ||| || ||| ||| ||| | | ||||| ||| | Sbjct 20051212 AACTCCCTCTCTATCTCCACCGCCTCCTTCACTATCCCCATCACGCGCTCCTCGCTTAAT 20051153 Query 48101 TTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCC 48160 ||||| | ||| || || | || ||| || || || | ||| | ||||| || Sbjct 20051152 TTGTTCCTCAGCAAGCTG---TACAACAAGCACGCGAAATCGCAGTGGAGTCCTTCATCT 20051096 Query 48161 CGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAG 48220 || ||| ||| |||| |||||| || || ||||| | ||| | || ||| | ||| Sbjct 20051095 CGCGAGATTAGCTCGTTCGAGAAGGTTAGGCCCGGCATTAACCCGCGCTTTTTCAACCAA 20051036 Query 48221 AAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGC 48280 || || || |||| ||| |||||||| || || ||||| || ||||| | || Sbjct 20051035 AATATCGCGCAGAAACTGCCCGAGAAGAATATCCCTTCCACGCAGGCAAACGCTATCAGT 20050976 Query 48281 CTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTC 48340 ||||| |||| | | ||| |||||| || ||||| || ||||| || Sbjct 20050975 CTCTCCGCGAATGTCTCCGAGCCGTC---GATCCAATTTAGGGCCCAATCGGCCTTTTTG 20050919 Query 48341 TTGATGCATGGCATCGTCTCTATGGCCCGGAAGA---GCTTCTTGCACTCACCTGCGTCC 48397 | ||| |||| ||| || | ||| || || | | |||| || | | || Sbjct 20050918 GCAACGCACGGCACCGTTTCAAAGGCGCGAAATAAGCGGCTCTTT---TCGTCGGAGTTT 20050862 Query 48398 GCAACATAGGTAGTGAGCAGCTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATC 48457 | || || || || | |||||| || ||||| | ||||| || ||||| Sbjct 20050861 TTTATGTACGTTTCTAGAAGGAGCGAGTACATTTCGGAGTGGATGTTCTCGATGGCGATT 20050802 Query 48458 TGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC 48517 ||||| ||||||||||| | ||||| | || || |||||| | ||| || | Sbjct 20050801 TGGAAGCCGTAGAAGGCACGCGCCTCGGAGACTTGGACTTCTTTCATGAACCTGGCGGCG 20050742 Query 48518 AGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAA 48577 || || || ||| || ||||| || || || |||||||| || || || | | ||| Sbjct 20050741 AGGTTTTCGAGGACGATTCCATCCGAGGCGGCGAAGAAGGCGAGCACGTGCGTGATGAAG 20050682 Query 48578 TGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCCT---GTACGTCTTTGCCCAGGTCCACT 48634 || ||||| | ||| || | ||||| | || | | ||| | |||||| || Sbjct 20050681 TGTTTCTCGTCGGCGGTTAG-GGATTCC--CACTGGCGGATGTCCTGCGACAGGTCGACC 20050625 Query 48635 TCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGTACATGCCCCATATGTCCGGATA 48693 || ||| | ||||| || || || ||||| |||||||| |||| || ||||| || Sbjct 20050624 TCCTCCGCCGTCCAAAATGAAGCTTCGGCTTTCTTGTACATTTCCCAGATTTCCGGGTA 20050566 >seq1030 Length=25649276 Score = 104 bits (114), Expect = 4e-17 Identities = 363/562 (65%), Gaps = 11/562 (2%) Strand=Plus/Minus Query 48127 CATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCA 48186 || ||| || || || | ||| | || || || || ||| | | |||| ||||| Sbjct 1352120 CAGGCACGCGAAATCGCAGTGGAGACCCTCATCTCGCGAGATCAACTCGTTTGAGAATGT 1352061 Query 48187 GAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAA 48246 | || ||||| | ||| | || ||||||||| || || || ||| || ||||| Sbjct 1352060 TAATCCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAAAAACTCCCTGAGAA 1352001 Query 48247 GAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTC 48306 ||| || |||||||| || |||||| | | ||||| |||||| | ||| Sbjct 1352000 GAAAATCCCCTCCACGCAAGCAAACGCGATTAATCTCTCCGCGAAAGTCTCCGAGCCGTC 1351941 Query 48307 TGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 |||||| | |||||| || ||||| || ||| || | |||||| ||||| Sbjct 1351940 ---GATCCAATTTAACGCCCACGTGGCTTTCTTTGCGACGCAGGGAACCGTCTCGATGGC 1351884 Query 48367 CCGGAAGAGC---TTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGC 48423 | ||||| ||||| || | | ||| | || || || ||| | Sbjct 1351883 GTGAAAGAGACGGTTCTTT---TCGTCGGAGTCTTTGATGTAAGTTTCTAGAAGCAGCGA 1351827 Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 |||||| || ||||| | ||||| || ||||| ||||| ||||||||||| | ||||| Sbjct 1351826 GTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGAGCCTC 1351767 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTG 48542 ||||| || || || ||| || ||| || || ||||| ||| || || || | Sbjct 1351766 GGCGACCTGGACCTCCGTCATGAACCT-TCCGGCGAGGTTCTCGAGGACGATGCCGTCGG 1351708 Query 48543 AAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCAT 48602 | || || |||||||| || || || | | ||| || ||||| ||| || || | Sbjct 1351707 AGGCTGCGAAGAAGGCGAGCACGTGCGTGACGAAGTGCTTCTCGTCAGCGGTTAGGGCCT 1351648 Query 48603 TCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTG 48662 |||| | | |||| || || ||||| || ||||||| || ||||| | Sbjct 1351647 CCCAGTGGCGGAGATCTTGCGAAAGATCAACTTCCTCAGCAGTCCAAAACGACGCTTCGG 1351588 Query 48663 CTTTTTTGTACATGCCCCATAT 48684 |||| |||||||| |||| || Sbjct 1351587 CTTTCTTGTACATTTCCCAAAT 1351566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931516521464320