Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrus_20clementina_20[refseq_20GCF_5F000493195.1_202013-11-08] 1,398 sequences; 301,364,702 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq1030 129 1e-24 >seq1030 Length=25649276 Score = 129 bits (142), Expect = 1e-24 Identities = 376/570 (66%), Gaps = 13/570 (2%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||||| ||||||||||| || || || ||||| || || || ||||||| Sbjct 1351566 ATTTGGGAAATGTACAAGAAAGCCGAAGCGTCGTTTTGGACTGCTGAGGAAGTTGATCTT 1351625 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 | | || | | |||| | || ||| || |||||| |||| || ||| | || Sbjct 1351626 TCGCAAGATCTCCGCCACTGGGAGGCCCTAACCGCTGACGAGAAGCACTTCGTCACGCAC 1351685 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 ||| | || ||||| |||||||| || || || || |||||| || || || ||| Sbjct 1351686 GTGCTCGCCTTCTTCGCAGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGGAAGGTTC 1351745 Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAA 25716 | | ||| || ||| || ||||| |||||||| ||||| || |||||||| Sbjct 1351746 ATGACGGAGGTCCAGGTCGCCGAGGCTCGCGCCTTCTACGGCTTCCAAATCGCCATCGAG 1351805 Query 25717 AATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGAG 25776 || | ||||| || |||| | |||||| || ||||| | |||| || ||| Sbjct 1351806 AACATCCACTCCGAAATGTACTCGCTGCTTCTAGAAACTTACATCAAAGACTCCGACGAA 1351865 Query 25777 AGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGG 25836 | | || || ||| ||||||||| | ||| || || | ||| || |||| Sbjct 1351866 AAGAACCGTCTCTTTCACGCCATCGAGACGGTTCCCTGCGTCGCAAAGAAAGCCACGTGG 1351925 Query 25837 GCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGC 25895 || | || |||||| || || | ||| || || | ||| | | | || ||||| Sbjct 1351926 GCGTTAAATTGGATCGACGGCTCGGAG----ACTTTCGCGGAGAGATTAATCGCGTTTGC 1351981 Query 25896 TGCTGTGGAGGGCATCTTTTTC--AGCG-GTTCGTTTGCGGCCATCTTCTGGCTCAAGCA 25952 | |||||||| || || ||| || | ||| |||||| | || || |||||||| | Sbjct 1351982 TTGCGTGGAGGGGATTTTCTTCTCAGGGAGTT--TTTGCG-CGATATTTTGGCTCAAAAA 1352038 Query 25953 GAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGACGAGGGTC 26011 | ||| ||||| ||| | || || || |||||| | ||| | || ||||||| Sbjct 1352039 GCGCGGGTTAATGCC-GGGATTAACATTCTCAAACGAGTTGATCTCGCGAGATGAGGGTC 1352097 Query 26012 TCCACAGAGATTTTGCCTGCCTGCTCTACA 26041 ||||| | ||||| || |||||| | |||| Sbjct 1352098 TCCACTGCGATTTCGCGTGCCTGTTGTACA 1352127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928828568437120